Yayınlar & Eserler

Yayın Ağı
Makaleler 44
Tümü (44)
SCI-E, SSCI, AHCI (40)
SCI-E, SSCI, AHCI, ESCI (40)
Scopus (44)
TRDizin (2)

1. Stability and Dynamics of the N-Terminal Domain of TDP-43 and the Effect of Point Mutations

Pınar O., K. Jana A., Yaşar F.
ACS OMEGA , cilt.11, sa.12, ss.19124-19133, 2026 (SCI-Expanded, Scopus)

2. Molecular Insight into the Effect of HIV-TAT Protein on Amyloid-β Peptides.

Jana A. K., Keskin R., Yaşar F.
ACS omega , cilt.9, sa.25, ss.27480-27491, 2024 (SCI-Expanded, Scopus)

3. Catalytic Reaction Mechanism of Bacterial GH92 α-1,2-Mannosidase: A QM/MM Metadynamics Study

SAĞIROĞLUGİL M., YAŞAR F.
ChemPhysChem , cilt.24, sa.24, 2023 (SCI-Expanded, Scopus)

4. The stability and dynamics of the Aβ40/Aβ42 interlaced mixed fibrils

Jana A. K., GÜVEN Ö., YAŞAR F.
Journal of Biomolecular Structure and Dynamics , 2023 (SCI-Expanded, Scopus)

5. Resolution exchange with tunneling for enhanced sampling of protein landscapes

Yasar F., Ray A. J., Hansmann U. H. E.
PHYSICAL REVIEW E , cilt.106, sa.1, 2022 (SCI-Expanded, Scopus) Creative Commons License

6. Interconversion between Serum Amyloid A Native and Fibril Conformations

Yasar F., Sheridan M. S., Hansmann U. H. E.
ACS OMEGA , cilt.7, sa.14, ss.12186-12192, 2022 (SCI-Expanded, Scopus)

7. Conformational stability of the tetrameric de novo designed hexcoil-Ala helical bundle

Demir K., Alici H., YAŞAR F.
CHINESE JOURNAL OF PHYSICS , cilt.56, sa.1, ss.46-57, 2018 (SCI-Expanded, Scopus)

8. Response to "Comment on 'Replica-exchange-with-tunneling for fast exploration of protein landscapes"' [J. Chem. Phys. 145, 057101 (2016)]

YAŞAR F., Bernhardt N. A., Hansmann U. H. E.
JOURNAL OF CHEMICAL PHYSICS , cilt.145, sa.5, 2016 (SCI-Expanded, Scopus) Creative Commons License

9. Replica-exchange-with-tunneling for fast exploration of protein landscapes

YAŞAR F., Bernhardt N. A., Hansmann U. H. E.
JOURNAL OF CHEMICAL PHYSICS , cilt.143, sa.22, 2015 (SCI-Expanded, Scopus)

10. Folding and self-assembly of a small heterotetramer

YAŞAR F., SIERADZAN A. K., HANSMANN U. H. E.
JOURNAL OF CHEMICAL PHYSICS , cilt.140, sa.10, 2014 (SCI-Expanded, Scopus) Creative Commons License

11. Multicanonical molecular dynamics simulations of the N-terminal domain of protein L9

YAŞAR F., Jiang P., Hansmann U. H. E.
EPL , cilt.105, sa.3, 2014 (SCI-Expanded, Scopus) Creative Commons License

12. The investigation of the secondary structure propensities and free-energy landscapes of peptide ligands by replica exchange molecular dynamics simulations

Demir K., Kilic N., DUDAK F. C., BOYACI İ. H., YAŞAR F.
MOLECULAR SIMULATION , cilt.40, sa.13, ss.1015-1025, 2014 (SCI-Expanded, Scopus)

13. In Silico Cross Seeding of A beta and Amylin Fibril-like Oligomers

Berhanu W. M., Yasar F., Hansmann U. H. E.
ACS CHEMICAL NEUROSCIENCE , cilt.4, sa.11, ss.1488-1500, 2013 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma

14. Sampling of Protein Folding Transitions: Multicanonical Versus Replica Exchange Molecular Dynamics

Jiang P., YAŞAR F., Hansmann U. H. E.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION , cilt.9, sa.8, ss.3816-3825, 2013 (SCI-Expanded, Scopus) Creative Commons License

15. Enhancing the affinity of SEB-binding peptides by repeating their sequence

Dudak F. C., Kilic N., Demir K., YAŞAR F., BOYACI İ. H.
BIOPOLYMERS , cilt.98, sa.2, ss.145-154, 2012 (SCI-Expanded, Scopus)

16. Thermodynamic and structural analysis of interactions between peptide ligands and SEB

Dudak F. C., Soykut E. A., Oguz M. E., YAŞAR F., BOYACI İ. H.
JOURNAL OF MOLECULAR RECOGNITION , cilt.23, sa.4, ss.369-378, 2010 (SCI-Expanded, Scopus)

17. The Systematic Simulations of the Hopfield Model by Multicanonical Algorithm

YAŞAR F., DİLAVER M.
CHINESE JOURNAL OF PHYSICS , cilt.47, sa.2, ss.226-237, 2009 (SCI-Expanded, Scopus)

18. THE STUDY OF PHASE TRANSITION BY PERIODIC DISTRIBUTION OF BIMODAL BONDS IN 2D POTTS MODEL

YAŞAR F., DİLAVER M.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.20, sa.2, ss.223-236, 2009 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

19. Solvation model effects on two specific peptides of milk protein

YAŞAR F., DEMİR K.
CHINESE JOURNAL OF PHYSICS , cilt.45, sa.6, ss.622-636, 2007 (SCI-Expanded, Scopus)

20. The simulation of spin glass model of neural networks by the Wang-Landau algorithm

YAŞAR F., DİLAVER M.
COMPUTER PHYSICS COMMUNICATIONS , cilt.177, sa.8, ss.625-630, 2007 (SCI-Expanded, Scopus)

21. The study of quenched bond randomness by Wang-Landau algorithm

Yasar F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.18, sa.7, ss.1107-1117, 2007 (SCI-Expanded, Scopus)

22. The study of helix-coil transition of polyalanine with single histogram method

Yasar F., DEMIR K.
COMPUTER PHYSICS COMMUNICATIONS , cilt.175, sa.9, ss.604-611, 2006 (SCI-Expanded, Scopus)

23. Study of two bioactive peptides in vacuum and solvent by molecular modeling

Yasar F., DEMIR K.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.17, sa.6, ss.825-839, 2006 (SCI-Expanded, Scopus)

24. The investigation of the secondary structures of various peptide sequences of beta-casein by the multicanonical simulation method

Yasar F., Celik S., Koksel H.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS , cilt.363, sa.2, ss.348-358, 2006 (SCI-Expanded, Scopus)

25. The investigation of the spin glass properties of the Hopfield neural network model

YAŞAR F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.16, sa.3, ss.427-437, 2005 (SCI-Expanded, Scopus)

26. The equilibrium thermodynamics of various peptide sequences

Yasar F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.15, sa.4, ss.583-593, 2004 (SCI-Expanded, Scopus)

27. Molecular modeling of various peptide sequences of gliadins and low-molecular-weight glutenin subunits

Yasar F., Celik S., Koksel H.
NAHRUNG-FOOD , cilt.47, sa.4, ss.238-242, 2003 (SCI-Expanded, Scopus)

28. Efficiency of the multicanonical simulation method as applied to peptides of increasing size: The heptapeptide deltorphin

YAŞAR F., Arkin H., Celik T., Berg B., Meirovitch H.
JOURNAL OF COMPUTATIONAL CHEMISTRY , cilt.23, sa.12, ss.1127-1134, 2002 (SCI-Expanded, Scopus)

29. Multicanonical simulations of some peptides

ARKIN H., YAŞAR F., CELIK T., Berg B., Meirovitch H.
Computer Physics Communications , cilt.147, ss.600-603, 2002 (SCI-Expanded, Scopus)

30. Molecular modelling of pentapeptide and tetrapeptide sequences of C-hordein

Arkin H., YAŞAR F., ÇELİK S., Celik S., KÖKSEL H.
JOURNAL OF THE INSTITUTE OF BREWING , cilt.107, sa.6, ss.383-388, 2001 (SCI-Expanded, Scopus)

31. Multicanonical simulation of spin systems with bond randomness

Yasar F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.12, sa.6, ss.793-800, 2001 (SCI-Expanded, Scopus)

32. MOLECULAR MODELING OF TWO HEXAPEPTIDE REPEAT MOTIFS OF HMW GLUTENIN SUBUNITS

HANDAN A., YAŞAR F., ÇELİK T., ÇELİK S., KÖKSEL H.
International Journal Of Modern Physics C , cilt.12, ss.281-292, 2001 (SCI-Expanded, Scopus)

33. Multicanonical simulations of five tetrapeptide sequences in the central domain of HMW glutenin

Arkin H., Yasar F., ÇELİK T., Celik S., Koksel H.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.11, sa.8, ss.1595-1606, 2000 (SCI-Expanded, Scopus)

34. Multicanonical procedure for continuum peptide models

YAŞAR F., Celik T., Berg B., Meirovitch H.
JOURNAL OF COMPUTATIONAL CHEMISTRY , cilt.21, sa.14, ss.1251-1261, 2000 (SCI-Expanded, Scopus)

35. Study of autocorrelation times in 2D potts model under quenched bond randomness

Yasar F., Gunduc Y., Celik T.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.11, sa.4, ss.707-712, 2000 (SCI-Expanded, Scopus)

36. Effects of the distribution of bimodal bonds on phase transition in 2D Potts model

YAŞAR F., Gündüç Y., CELIK T.
Physica A: Statistical Mechanics and its Applications , cilt.274, sa.3, ss.537-544, 1999 (SCI-Expanded, Scopus)

37. Softening of phase transition by random distribution of bimodal-bonds in the 2D 8-state Potts model

Yasar F., Gunduc Y., Celik T.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.10, sa.5, ss.961-966, 1999 (SCI-Expanded, Scopus)

38. Rounding of phase transition in the 2D 8-state random bond Potts model

ÇELİK T., YAŞAR F., Gündüç Y.
Computer Physics Communications , cilt.121, ss.194-196, 1999 (SCI-Expanded, Scopus)

39. Softening of Phase Transition in the Potts Model Under The Quenched Bond Randomness

YAŞAR F., GÜNDÜÇ Y., TARİK Ç.
Turkish Journal of Physics , ss.233, 1999 (Scopus, TRDizin)

40. Softening of the phase transition in a two-dimensional Potts model under quenched bond randomness

Yasar F., Gunduc Y., ÇELİK T.
PHYSICAL REVIEW E , cilt.58, sa.4, ss.4210-4212, 1998 (SCI-Expanded, Scopus) Creative Commons License

41. Short-time dynamics of cluster growth in the Potts model

Yasar F., GUNDUC Y., AYDIN M., CELIK T.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS , cilt.255, ss.430-438, 1998 (SCI-Expanded, Scopus)

42. Cluster Study of Phase Transition in Two Dimentional Q State Potts Model

AYDIN M., GÜNDÜÇ Y., ÇELİK T., YAŞAR F., BURCU O.
Turkish Journal of Physics , ss.64-72, 1997 (Scopus)

43. Dynamics of Clusters in Three Dimensional 3 State potts Model

YAŞAR F., GÜNDÜÇ Y., AYDIN M., ÇELİK T.
Turkish Journal of Physics , ss.153, 1997 (Scopus)

44. Multicanonical Simulations of the Hopfield Model

YAŞAR F., TARİK Ç.
Turkish Journal of Physics , ss.71, 1996 (Scopus, TRDizin)
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler 4

1. Mixed Model Replica Exchange to Study Switching Proteins

NATHAN A. B., ULRİCH H. H., YAŞAR F.
From Computational Biophyscs To System Biology (CBSB15), Oklahoma, Amerika Birleşik Devletleri, 17 - 19 Mayıs 2015

2. Hybrid MC MD simulation of the Trp cage miniprotein in implicipt solvent

YAŞAR F., NATHAN B., ULRİCH H. H.
From Computational Biophysics to Systems Biology (CBSB2015), Oklahoma, Amerika Birleşik Devletleri, 17 - 19 Mayıs 2015

3. Non linear lens distortion correction procedure in biomechanical analysis of human movement

ARITAN S., YAŞAR F.
9th Annual Congress European College of Sport Science, Clermont-Ferrand, Fransa, 3 - 06 Temmuz 2004, (Özet Bildiri)

4. Molecular modeling of peptide sequences of gliadins and LMW-glutenin subunits

Yasar F., CELIK S., KOKSEL H.
8th International Gluten Workshop, Viterbo, İtalya, 8 - 10 Eylül 2003, ss.74-77, (Tam Metin Bildiri)
Metrikler

Yayın

48

Yayın (WoS)

41

Yayın (Scopus)

44

Proje

7

Tez Danışmanlığı

3

Açık Erişim

10
BM Sürdürülebilir Kalkınma Amaçları
SDG 2: AMAÇ 2: AÇLIĞA SON
SDG 3: AMAÇ 3: SAĞLIKLI BİREYLER
SDG 7: AMAÇ 7: ERİŞİLEBİLİR VE TEMİZ ENERJİ