Yayınlar & Eserler

Yayın Ağı
Makaleler 43
Tümü (43)
SCI-E, SSCI, AHCI (39)
SCI-E, SSCI, AHCI, ESCI (39)
Scopus (43)
TRDizin (2)

1. Molecular Insight into the Effect of HIV-TAT Protein on Amyloid-β Peptides.

Jana A. K., Keskin R., Yaşar F.
ACS omega , cilt.9, sa.25, ss.27480-27491, 2024 (SCI-Expanded, Scopus) identifier identifier identifier

2. Catalytic Reaction Mechanism of Bacterial GH92 α-1,2-Mannosidase: A QM/MM Metadynamics Study

SAĞIROĞLUGİL M., YAŞAR F.
ChemPhysChem , cilt.24, sa.24, 2023 (SCI-Expanded, Scopus) identifier identifier identifier

3. The stability and dynamics of the Aβ40/Aβ42 interlaced mixed fibrils

Jana A. K., GÜVEN Ö., YAŞAR F.
Journal of Biomolecular Structure and Dynamics , 2023 (SCI-Expanded, Scopus) identifier identifier identifier

4. Resolution exchange with tunneling for enhanced sampling of protein landscapes

Yasar F., Ray A. J., Hansmann U. H. E.
PHYSICAL REVIEW E , cilt.106, sa.1, 2022 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier identifier

5. Interconversion between Serum Amyloid A Native and Fibril Conformations

Yasar F., Sheridan M. S., Hansmann U. H. E.
ACS OMEGA , cilt.7, sa.14, ss.12186-12192, 2022 (SCI-Expanded, Scopus) identifier identifier identifier

6. Conformational stability of the tetrameric de novo designed hexcoil-Ala helical bundle

Demir K., Alici H., YAŞAR F.
CHINESE JOURNAL OF PHYSICS , cilt.56, sa.1, ss.46-57, 2018 (SCI-Expanded, Scopus) identifier identifier

7. Response to "Comment on 'Replica-exchange-with-tunneling for fast exploration of protein landscapes"' [J. Chem. Phys. 145, 057101 (2016)]

YAŞAR F., Bernhardt N. A., Hansmann U. H. E.
JOURNAL OF CHEMICAL PHYSICS , cilt.145, sa.5, 2016 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

8. Replica-exchange-with-tunneling for fast exploration of protein landscapes

YAŞAR F., Bernhardt N. A., Hansmann U. H. E.
JOURNAL OF CHEMICAL PHYSICS , cilt.143, sa.22, 2015 (SCI-Expanded, Scopus) identifier identifier identifier

9. Folding and self-assembly of a small heterotetramer

YAŞAR F., SIERADZAN A. K., HANSMANN U. H. E.
JOURNAL OF CHEMICAL PHYSICS , cilt.140, sa.10, 2014 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

10. Multicanonical molecular dynamics simulations of the N-terminal domain of protein L9

YAŞAR F., Jiang P., Hansmann U. H. E.
EPL , cilt.105, sa.3, 2014 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

11. The investigation of the secondary structure propensities and free-energy landscapes of peptide ligands by replica exchange molecular dynamics simulations

Demir K., Kilic N., DUDAK F. C., BOYACI İ. H., YAŞAR F.
MOLECULAR SIMULATION , cilt.40, sa.13, ss.1015-1025, 2014 (SCI-Expanded, Scopus) identifier identifier

12. In Silico Cross Seeding of A beta and Amylin Fibril-like Oligomers

Berhanu W. M., Yasar F., Hansmann U. H. E.
ACS CHEMICAL NEUROSCIENCE , cilt.4, sa.11, ss.1488-1500, 2013 (SCI-Expanded, Scopus) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

13. Sampling of Protein Folding Transitions: Multicanonical Versus Replica Exchange Molecular Dynamics

Jiang P., YAŞAR F., Hansmann U. H. E.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION , cilt.9, sa.8, ss.3816-3825, 2013 (SCI-Expanded, Scopus) Creative Commons License identifier identifier identifier

14. Enhancing the affinity of SEB-binding peptides by repeating their sequence

Dudak F. C., Kilic N., Demir K., YAŞAR F., BOYACI İ. H.
BIOPOLYMERS , cilt.98, sa.2, ss.145-154, 2012 (SCI-Expanded, Scopus) identifier identifier identifier

15. Thermodynamic and structural analysis of interactions between peptide ligands and SEB

Dudak F. C., Soykut E. A., Oguz M. E., YAŞAR F., BOYACI İ. H.
JOURNAL OF MOLECULAR RECOGNITION , cilt.23, sa.4, ss.369-378, 2010 (SCI-Expanded, Scopus) identifier identifier identifier

16. The Systematic Simulations of the Hopfield Model by Multicanonical Algorithm

YAŞAR F., DİLAVER M.
CHINESE JOURNAL OF PHYSICS , cilt.47, sa.2, ss.226-237, 2009 (SCI-Expanded, Scopus) identifier identifier

17. THE STUDY OF PHASE TRANSITION BY PERIODIC DISTRIBUTION OF BIMODAL BONDS IN 2D POTTS MODEL

YAŞAR F., DİLAVER M.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.20, sa.2, ss.223-236, 2009 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma identifier identifier

18. Solvation model effects on two specific peptides of milk protein

YAŞAR F., DEMİR K.
CHINESE JOURNAL OF PHYSICS , cilt.45, sa.6, ss.622-636, 2007 (SCI-Expanded, Scopus) identifier identifier

19. The simulation of spin glass model of neural networks by the Wang-Landau algorithm

YAŞAR F., DİLAVER M.
COMPUTER PHYSICS COMMUNICATIONS , cilt.177, sa.8, ss.625-630, 2007 (SCI-Expanded, Scopus) identifier identifier

20. The study of quenched bond randomness by Wang-Landau algorithm

Yasar F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.18, sa.7, ss.1107-1117, 2007 (SCI-Expanded, Scopus) identifier identifier

21. The study of helix-coil transition of polyalanine with single histogram method

Yasar F., DEMIR K.
COMPUTER PHYSICS COMMUNICATIONS , cilt.175, sa.9, ss.604-611, 2006 (SCI-Expanded, Scopus) identifier identifier

22. Study of two bioactive peptides in vacuum and solvent by molecular modeling

Yasar F., DEMIR K.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.17, sa.6, ss.825-839, 2006 (SCI-Expanded, Scopus) identifier identifier

23. The investigation of the secondary structures of various peptide sequences of beta-casein by the multicanonical simulation method

Yasar F., Celik S., Koksel H.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS , cilt.363, sa.2, ss.348-358, 2006 (SCI-Expanded, Scopus) identifier identifier

24. The investigation of the spin glass properties of the Hopfield neural network model

YAŞAR F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.16, sa.3, ss.427-437, 2005 (SCI-Expanded, Scopus) identifier identifier

25. The equilibrium thermodynamics of various peptide sequences

Yasar F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.15, sa.4, ss.583-593, 2004 (SCI-Expanded, Scopus) identifier identifier

26. Molecular modeling of various peptide sequences of gliadins and low-molecular-weight glutenin subunits

Yasar F., Celik S., Koksel H.
NAHRUNG-FOOD , cilt.47, sa.4, ss.238-242, 2003 (SCI-Expanded, Scopus) identifier identifier identifier

27. Efficiency of the multicanonical simulation method as applied to peptides of increasing size: The heptapeptide deltorphin

YAŞAR F., Arkin H., Celik T., Berg B., Meirovitch H.
JOURNAL OF COMPUTATIONAL CHEMISTRY , cilt.23, sa.12, ss.1127-1134, 2002 (SCI-Expanded, Scopus) identifier identifier identifier

28. Multicanonical simulations of some peptides

ARKIN H., YAŞAR F., CELIK T., Berg B., Meirovitch H.
Computer Physics Communications , cilt.147, ss.600-603, 2002 (SCI-Expanded, Scopus) identifier identifier

29. Molecular modelling of pentapeptide and tetrapeptide sequences of C-hordein

Arkin H., YAŞAR F., ÇELİK S., Celik S., KÖKSEL H.
JOURNAL OF THE INSTITUTE OF BREWING , cilt.107, sa.6, ss.383-388, 2001 (SCI-Expanded, Scopus) identifier identifier

30. Multicanonical simulation of spin systems with bond randomness

Yasar F.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.12, sa.6, ss.793-800, 2001 (SCI-Expanded, Scopus) identifier identifier

31. MOLECULAR MODELING OF TWO HEXAPEPTIDE REPEAT MOTIFS OF HMW GLUTENIN SUBUNITS

HANDAN A., YAŞAR F., ÇELİK T., ÇELİK S., KÖKSEL H.
International Journal Of Modern Physics C , cilt.12, ss.281-292, 2001 (SCI-Expanded, Scopus) identifier identifier

32. Multicanonical simulations of five tetrapeptide sequences in the central domain of HMW glutenin

Arkin H., Yasar F., ÇELİK T., Celik S., Koksel H.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.11, sa.8, ss.1595-1606, 2000 (SCI-Expanded, Scopus) identifier identifier

33. Multicanonical procedure for continuum peptide models

YAŞAR F., Celik T., Berg B., Meirovitch H.
JOURNAL OF COMPUTATIONAL CHEMISTRY , cilt.21, sa.14, ss.1251-1261, 2000 (SCI-Expanded, Scopus) identifier identifier

34. Study of autocorrelation times in 2D potts model under quenched bond randomness

Yasar F., Gunduc Y., Celik T.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.11, sa.4, ss.707-712, 2000 (SCI-Expanded, Scopus) identifier identifier

35. Effects of the distribution of bimodal bonds on phase transition in 2D Potts model

YAŞAR F., Gündüç Y., CELIK T.
Physica A: Statistical Mechanics and its Applications , cilt.274, sa.3, ss.537-544, 1999 (SCI-Expanded, Scopus) identifier identifier

36. Softening of phase transition by random distribution of bimodal-bonds in the 2D 8-state Potts model

Yasar F., Gunduc Y., Celik T.
INTERNATIONAL JOURNAL OF MODERN PHYSICS C , cilt.10, sa.5, ss.961-966, 1999 (SCI-Expanded, Scopus) identifier identifier

37. Rounding of phase transition in the 2D 8-state random bond Potts model

ÇELİK T., YAŞAR F., Gündüç Y.
Computer Physics Communications , cilt.121, ss.194-196, 1999 (SCI-Expanded, Scopus) identifier identifier

38. Softening of Phase Transition in the Potts Model Under The Quenched Bond Randomness

YAŞAR F., GÜNDÜÇ Y., TARİK Ç.
Turkish Journal of Physics , ss.233, 1999 (Scopus, TRDizin)

39. Softening of the phase transition in a two-dimensional Potts model under quenched bond randomness

Yasar F., Gunduc Y., ÇELİK T.
PHYSICAL REVIEW E , cilt.58, sa.4, ss.4210-4212, 1998 (SCI-Expanded, Scopus) Creative Commons License identifier identifier

40. Short-time dynamics of cluster growth in the Potts model

Yasar F., GUNDUC Y., AYDIN M., CELIK T.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS , cilt.255, ss.430-438, 1998 (SCI-Expanded, Scopus) identifier identifier

41. Dynamics of Clusters in Three Dimensional 3 State potts Model

YAŞAR F., GÜNDÜÇ Y., AYDIN M., ÇELİK T.
Turkish Journal of Physics , ss.153, 1997 (Scopus)

42. Cluster Study of Phase Transition in Two Dimentional Q State Potts Model

AYDIN M., GÜNDÜÇ Y., ÇELİK T., YAŞAR F., BURCU O.
Turkish Journal of Physics , ss.64-72, 1997 (Scopus)

43. Multicanonical Simulations of the Hopfield Model

YAŞAR F., TARİK Ç.
Turkish Journal of Physics , ss.71, 1996 (Scopus, TRDizin)
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler 4

1. Mixed Model Replica Exchange to Study Switching Proteins

NATHAN A. B., ULRİCH H. H., YAŞAR F.
From Computational Biophyscs To System Biology (CBSB15), Oklahoma, Amerika Birleşik Devletleri, 17 - 19 Mayıs 2015

2. Hybrid MC MD simulation of the Trp cage miniprotein in implicipt solvent

YAŞAR F., NATHAN B., ULRİCH H. H.
From Computational Biophysics to Systems Biology (CBSB2015), Oklahoma, Amerika Birleşik Devletleri, 17 - 19 Mayıs 2015

3. Non linear lens distortion correction procedure in biomechanical analysis of human movement

ARITAN S., YAŞAR F.
9th Annual Congress European College of Sport Science, Clermont-Ferrand, Fransa, 3 - 06 Temmuz 2004, (Özet Bildiri)

4. Molecular modeling of peptide sequences of gliadins and LMW-glutenin subunits

Yasar F., CELIK S., KOKSEL H.
8th International Gluten Workshop, Viterbo, İtalya, 8 - 10 Eylül 2003, ss.74-77, (Tam Metin Bildiri) identifier
Metrikler

Yayın

47

Yayın (WoS)

40

Yayın (Scopus)

43

Atıf (WoS)

250

H-İndeks (WoS)

7

Atıf (Scopus)

260

H-İndeks (Scopus)

7

Proje

7

Tez Danışmanlığı

3

Açık Erişim

7
BM Sürdürülebilir Kalkınma Amaçları