Prof. FATİH YAŞAR

Publication Network

Journal articles indexed in SCI, SSCI, and AHCI 39

Molecular Insight into the Effect of HIV-TAT Protein on Amyloid-β Peptides.

Jana A. K., Keskin R., Yaşar F.

ACS omega , vol.9, no.25, pp.27480-27491, 2024 (SCI-Expanded)

Catalytic Reaction Mechanism of Bacterial GH92 α-1,2-Mannosidase: A QM/MM Metadynamics Study

SAĞIROĞLUGİL M., YAŞAR F.

ChemPhysChem , vol.24, no.24, 2023 (SCI-Expanded)

The stability and dynamics of the Aβ40/Aβ42 interlaced mixed fibrils

Jana A. K., GÜVEN Ö., YAŞAR F.

Journal of Biomolecular Structure and Dynamics , 2023 (SCI-Expanded)

Resolution exchange with tunneling for enhanced sampling of protein landscapes

Yasar F., Ray A. J., Hansmann U. H. E.

PHYSICAL REVIEW E , vol.106, no.1, 2022 (SCI-Expanded)

Interconversion between Serum Amyloid A Native and Fibril Conformations

Yasar F., Sheridan M. S., Hansmann U. H. E.

ACS OMEGA , vol.7, no.14, pp.12186-12192, 2022 (SCI-Expanded)

Conformational stability of the tetrameric de novo designed hexcoil-Ala helical bundle

Demir K., Alici H., YAŞAR F.

CHINESE JOURNAL OF PHYSICS , vol.56, no.1, pp.46-57, 2018 (SCI-Expanded)

Response to "Comment on 'Replica-exchange-with-tunneling for fast exploration of protein landscapes"' [J. Chem. Phys. 145, 057101 (2016)]

YAŞAR F., Bernhardt N. A., Hansmann U. H. E.

JOURNAL OF CHEMICAL PHYSICS , vol.145, no.5, 2016 (SCI-Expanded)

Replica-exchange-with-tunneling for fast exploration of protein landscapes

YAŞAR F., Bernhardt N. A., Hansmann U. H. E.

JOURNAL OF CHEMICAL PHYSICS , vol.143, no.22, 2015 (SCI-Expanded)

Folding and self-assembly of a small heterotetramer

YAŞAR F., SIERADZAN A. K., HANSMANN U. H. E.

JOURNAL OF CHEMICAL PHYSICS , vol.140, no.10, 2014 (SCI-Expanded)

Multicanonical molecular dynamics simulations of the N-terminal domain of protein L9

YAŞAR F., Jiang P., Hansmann U. H. E.

EPL , vol.105, no.3, 2014 (SCI-Expanded)

The investigation of the secondary structure propensities and free-energy landscapes of peptide ligands by replica exchange molecular dynamics simulations

Demir K., Kilic N., DUDAK F. C., BOYACI İ. H., YAŞAR F.

MOLECULAR SIMULATION , vol.40, no.13, pp.1015-1025, 2014 (SCI-Expanded)

In Silico Cross Seeding of A beta and Amylin Fibril-like Oligomers

Berhanu W. M., Yasar F., Hansmann U. H. E.

ACS CHEMICAL NEUROSCIENCE , vol.4, no.11, pp.1488-1500, 2013 (SCI-Expanded)

Sampling of Protein Folding Transitions: Multicanonical Versus Replica Exchange Molecular Dynamics

Jiang P., YAŞAR F., Hansmann U. H. E.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION , vol.9, no.8, pp.3816-3825, 2013 (SCI-Expanded)

Enhancing the affinity of SEB-binding peptides by repeating their sequence

Dudak F. C., Kilic N., Demir K., YAŞAR F., BOYACI İ. H.

BIOPOLYMERS , vol.98, no.2, pp.145-154, 2012 (SCI-Expanded)

Thermodynamic and structural analysis of interactions between peptide ligands and SEB

Dudak F. C., Soykut E. A., Oguz M. E., YAŞAR F., BOYACI İ. H.

JOURNAL OF MOLECULAR RECOGNITION , vol.23, no.4, pp.369-378, 2010 (SCI-Expanded)

The Systematic Simulations of the Hopfield Model by Multicanonical Algorithm

YAŞAR F., DİLAVER M.

CHINESE JOURNAL OF PHYSICS , vol.47, no.2, pp.226-237, 2009 (SCI-Expanded)

THE STUDY OF PHASE TRANSITION BY PERIODIC DISTRIBUTION OF BIMODAL BONDS IN 2D POTTS MODEL

YAŞAR F., DİLAVER M.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.20, no.2, pp.223-236, 2009 (SCI-Expanded) Sustainable Development

Solvation model effects on two specific peptides of milk protein

YAŞAR F., DEMİR K.

CHINESE JOURNAL OF PHYSICS , vol.45, no.6, pp.622-636, 2007 (SCI-Expanded)

The simulation of spin glass model of neural networks by the Wang-Landau algorithm

YAŞAR F., DİLAVER M.

COMPUTER PHYSICS COMMUNICATIONS , vol.177, no.8, pp.625-630, 2007 (SCI-Expanded)

The study of quenched bond randomness by Wang-Landau algorithm

Yasar F.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.18, no.7, pp.1107-1117, 2007 (SCI-Expanded)

The study of helix-coil transition of polyalanine with single histogram method

Yasar F., DEMIR K.

COMPUTER PHYSICS COMMUNICATIONS , vol.175, no.9, pp.604-611, 2006 (SCI-Expanded)

Study of two bioactive peptides in vacuum and solvent by molecular modeling

Yasar F., DEMIR K.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.17, no.6, pp.825-839, 2006 (SCI-Expanded)

The investigation of the secondary structures of various peptide sequences of beta-casein by the multicanonical simulation method

Yasar F., Celik S., Koksel H.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS , vol.363, no.2, pp.348-358, 2006 (SCI-Expanded)

The investigation of the spin glass properties of the Hopfield neural network model

YAŞAR F.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.16, no.3, pp.427-437, 2005 (SCI-Expanded)

The equilibrium thermodynamics of various peptide sequences

Yasar F.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.15, no.4, pp.583-593, 2004 (SCI-Expanded)

Molecular modeling of various peptide sequences of gliadins and low-molecular-weight glutenin subunits

Yasar F., Celik S., Koksel H.

NAHRUNG-FOOD , vol.47, no.4, pp.238-242, 2003 (SCI-Expanded)

Efficiency of the multicanonical simulation method as applied to peptides of increasing size: The heptapeptide deltorphin

YAŞAR F., Arkin H., Celik T., Berg B., Meirovitch H.

JOURNAL OF COMPUTATIONAL CHEMISTRY , vol.23, no.12, pp.1127-1134, 2002 (SCI-Expanded)

Multicanonical simulations of some peptides

ARKIN H., YAŞAR F., CELIK T., Berg B., Meirovitch H.

Computer Physics Communications , vol.147, pp.600-603, 2002 (SCI-Expanded)

Molecular modelling of pentapeptide and tetrapeptide sequences of C-hordein

Arkin H., YAŞAR F., ÇELİK S., Celik S., KÖKSEL H.

JOURNAL OF THE INSTITUTE OF BREWING , vol.107, no.6, pp.383-388, 2001 (SCI-Expanded)

Multicanonical simulation of spin systems with bond randomness

Yasar F.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.12, no.6, pp.793-800, 2001 (SCI-Expanded)

MOLECULAR MODELING OF TWO HEXAPEPTIDE REPEAT MOTIFS OF HMW GLUTENIN SUBUNITS

HANDAN A., YAŞAR F., ÇELİK T., ÇELİK S., KÖKSEL H.

International Journal Of Modern Physics C , vol.12, pp.281-292, 2001 (SCI-Expanded)

Multicanonical simulations of five tetrapeptide sequences in the central domain of HMW glutenin

Arkin H., Yasar F., ÇELİK T., Celik S., Koksel H.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.11, no.8, pp.1595-1606, 2000 (SCI-Expanded)

Multicanonical procedure for continuum peptide models

YAŞAR F., Celik T., Berg B., Meirovitch H.

JOURNAL OF COMPUTATIONAL CHEMISTRY , vol.21, no.14, pp.1251-1261, 2000 (SCI-Expanded)

Study of autocorrelation times in 2D potts model under quenched bond randomness

Yasar F., Gunduc Y., Celik T.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.11, no.4, pp.707-712, 2000 (SCI-Expanded)

Effects of the distribution of bimodal bonds on phase transition in 2D Potts model

YAŞAR F., Gündüç Y., CELIK T.

Physica A: Statistical Mechanics and its Applications , vol.274, no.3, pp.537-544, 1999 (SCI-Expanded)

Softening of phase transition by random distribution of bimodal-bonds in the 2D 8-state Potts model

Yasar F., Gunduc Y., Celik T.

INTERNATIONAL JOURNAL OF MODERN PHYSICS C , vol.10, no.5, pp.961-966, 1999 (SCI-Expanded)

Rounding of phase transition in the 2D 8-state random bond Potts model

ÇELİK T., YAŞAR F., Gündüç Y.

Computer Physics Communications , vol.121, pp.194-196, 1999 (SCI-Expanded)

Softening of the phase transition in a two-dimensional Potts model under quenched bond randomness

Yasar F., Gunduc Y., ÇELİK T.

PHYSICAL REVIEW E , vol.58, no.4, pp.4210-4212, 1998 (SCI-Expanded)

Short-time dynamics of cluster growth in the Potts model

Yasar F., GUNDUC Y., AYDIN M., CELIK T.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS , vol.255, pp.430-438, 1998 (SCI-Expanded)

Articles Published in Other Journals 4

Softening of Phase Transition in the Potts Model Under The Quenched Bond Randomness

YAŞAR F., GÜNDÜÇ Y., TARİK Ç.

Turkish Journal of Physics , pp.233, 1999 (Scopus)

Cluster Study of Phase Transition in Two Dimentional Q State Potts Model

AYDIN M., GÜNDÜÇ Y., ÇELİK T., YAŞAR F., BURCU O.

Turkish Journal of Physics , pp.64-72, 1997 (Scopus)

Dynamics of Clusters in Three Dimensional 3 State potts Model

YAŞAR F., GÜNDÜÇ Y., AYDIN M., ÇELİK T.

Turkish Journal of Physics , pp.153, 1997 (Scopus)

Multicanonical Simulations of the Hopfield Model

YAŞAR F., TARİK Ç.

Turkish Journal of Physics , pp.71, 1996 (Scopus)

Papers Presented at Peer-Reviewed Scientific Conferences 4

Mixed Model Replica Exchange to Study Switching Proteins

NATHAN A. B., ULRİCH H. H., YAŞAR F.

From Computational Biophyscs To System Biology (CBSB15), Oklahoma, United States Of America, 17 - 19 May 2015

Hybrid MC MD simulation of the Trp cage miniprotein in implicipt solvent

YAŞAR F., NATHAN B., ULRİCH H. H.

From Computational Biophysics to Systems Biology (CBSB2015), Oklahoma, United States Of America, 17 - 19 May 2015

Non linear lens distortion correction procedure in biomechanical analysis of human movement

ARITAN S., YAŞAR F.

9th Annual Congress European College of Sport Science, Clermont-Ferrand, France, 3 - 06 July 2004, (Summary Text)

Molecular modeling of peptide sequences of gliadins and LMW-glutenin subunits

Yasar F., CELIK S., KOKSEL H.

8th International Gluten Workshop, Viterbo, Italy, 8 - 10 September 2003, pp.74-77, (Full Text)

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