Publications & Works

Publication Network
Journal articles indexed in SCI, SSCI, and AHCI 36

Circadian rhythm and aryl hydrocarbon receptor crosstalk in bone marrow adipose tissue and implications in leukemia

Muratoglu B., ÖZDEMİR SAKA C., EYLEM C. C., REÇBER T., NEMUTLU E., YET İ., et al.
SCIENTIFIC REPORTS , no.1, 2025 (SCI-Expanded) identifier identifier

Integrative Multi-Omics Approach in Human Colon Adenocarcinoma Cell Line: Identification of Phenotypic Changes Observed in Cisplatin and 5-Fluorouracil Resistance

Ozen G., EYLEM C. C., BAYSAL İ., Kocak E., YABANOĞLU ÇİFTÇİ S., KIR S., et al.
MICROCHEMICAL JOURNAL , 2025 (SCI-Expanded) identifier

N-acetylcysteine stimulates organelle malfunction in endometriotic cells via IFN-gamma signaling

KARAKOÇ E., OSKAY HALAÇLI S., HANELCI R. H., AYHAN S., EYLEM C. C., NEMUTLU E., et al.
SCIENTIFIC REPORTS , no.1, 2025 (SCI-Expanded) identifier identifier

Detailed characterization of bone marrow adipose tissue mesenchymal stem cells in healthy donor, Fanconi anemia, and acute myeloid leukemia

Muratoglu B., ÖZDEMİR SAKA C., EYLEM C. C., REÇBER T., NEMUTLU E., ALPDÜNDAR BULUT E., et al.
BONE , 2025 (SCI-Expanded) identifier identifier

Tracing of Amino Acids Dynamics in Cell Lines Based on <SUP>18</SUP>O Stable Isotope Labeling

EYLEM C. C., BAYSAL İ., YABANOĞLU ÇİFTÇİ S., NEMUTLU E.
ANALYTICAL CHEMISTRY , no.4, pp.2143-2152, 2025 (SCI-Expanded) identifier identifier

Optimized high-throughput protocols for comprehensive metabolomic and lipidomic profiling of brain sample

EYLEM C. C., NEMUTLU E., DOĞAN A., Acik V., Matyar S., Gezercan Y., et al.
TALANTA , vol.282, 2025 (SCI-Expanded) identifier identifier identifier

Biological activities, Peptidomics and <i>in silico</i> analysis of low-fat Cheddar cheese after <i>in vitro</i> digestion: Impact of blending camel and bovine Milk

Ali A. H., ÖZTÜRK H. İ., EYLEM C. C., NEMUTLU E., Tarique M., Subhash A., et al.
FOOD CHEMISTRY , vol.460, 2024 (SCI-Expanded) identifier identifier identifier

Glutamine withdrawal leads to the preferential activation of lipid metabolism in metastatic colorectal cancer

Taskiran A. E. G., Karaoglu D. A., EYLEM C. C., Ermis C., Guederer I., NEMUTLU E., et al.
TRANSLATIONAL ONCOLOGY , vol.48, 2024 (SCI-Expanded) identifier identifier identifier

Omic Studies on In Vitro Cystinosis Model: siRNA-Mediated CTNS Gene Silencing in HK-2 Cells

Baysal İ., YABANOĞLU ÇİFTÇİ S., NEMUTLU E., EYLEM C. C., Gök-Topak E. D., ULUBAYRAM K., et al.
Laboratory investigation; a journal of technical methods and pathology , vol.104, no.1, pp.100287, 2024 (SCI-Expanded) identifier identifier

Manipulating macrophage polarization with nanoparticles to control metastatic behavior in heterotypic breast cancer micro-tissues via exosome signaling

Sungu M., Isik M., GÜLER Ü., EYLEM C. C., ESKİZENGİN H., NEMUTLU E., et al.
Nanoscale , vol.16, no.1, pp.394-410, 2023 (SCI-Expanded) identifier identifier

Molecular docking, synthesis, anticancer activity, and metabolomics study of boronic acid ester-containing fingolimod derivatives

DOYDUK D., DERKUŞ B., Sari B., EYLEM C. C., NEMUTLU E., YILDIRIR Y.
Archiv der Pharmazie , vol.356, no.12, 2023 (SCI-Expanded) identifier identifier

Bioactive and chemically defined hydrogels with tunable stiffness guide cerebral organoid formation and modulate multi-omics plasticity in cerebral organoids

Isik M., Okesola B. O., EYLEM C. C., Kocak E., NEMUTLU E., D'Este M., et al.
Acta Biomaterialia , vol.171, pp.223-238, 2023 (SCI-Expanded) identifier identifier

3D Printing of Extracellular Matrix-Based Multicomponent, All-Natural, Highly Elastic, and Functional Materials toward Vascular Tissue Engineering

Isik M., Karakaya E., Arslan T. S., Atila D., ERDOĞAN Y. K., ARSLAN Y. E., et al.
Advanced Healthcare Materials , vol.12, no.20, 2023 (SCI-Expanded) identifier identifier identifier

Metabolomic Analyses to Identify Candidate Biomarkers of Cystinosis

NEMUTLU E., ÖZALTIN F., YABANOĞLU ÇİFTÇİ S., GÜLHAN B., Eylem C. C., BAYSAL İ., et al.
International Journal of Molecular Sciences , vol.24, no.3, 2023 (SCI-Expanded) Creative Commons License identifier identifier identifier

Green Alternatives in Pharmaceutical and Bioanalytical Analysis of TDM Required Drugs: Procainamide

Ülgen M., EYLEM C. C., DOĞAN A., Akduman N. E. B.
Combinatorial Chemistry and High Throughput Screening , vol.26, no.15, pp.2656-2667, 2023 (SCI-Expanded) identifier identifier

Tuning the Cell-Adhesive Properties of Two-Component Hybrid Hydrogels to Modulate Cancer Cell Behavior, Metastasis, and Death Pathways

Isik M., Okesola B. O., Eylem C. C., Kocak E., NEMUTLU E., EMREGÜL E., et al.
BIOMACROMOLECULES , vol.23, no.10, pp.4254-4267, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

High-Throughput Single-Step plasma sample extraction optimization strategies with experimental design for LC-MS and GC-MS integrated metabolomics and lipidomics analysis

Eylem C. C., NEMUTLU E., DOĞAN A., Acik V., Matyar S., Gezercan Y., et al.
MICROCHEMICAL JOURNAL , vol.179, 2022 (SCI-Expanded) identifier identifier

Omics technologies for high-throughput-screening of cell-biomaterial interactions

Sari B., Isik M., Eylem C. C., Bektas C., Okesola B. O., Karakaya E., et al.
MOLECULAR OMICS , vol.18, no.7, pp.591-615, 2022 (SCI-Expanded) identifier identifier identifier

Do Thickening Agents Used in Dysphagia Diet Affect Drug Bioavailability?

ILGAZ F., TİMUR S. S., Eylem C. C., NEMUTLU E., EROĞLU ERDEM Ç., EROĞLU H., et al.
EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES , vol.174, 2022 (SCI-Expanded) identifier identifier identifier

Xenogenic Neural Stem Cell-Derived Extracellular Nanovesicles Modulate Human Mesenchymal Stem Cell Fate and Reconstruct Metabolomic Structure

DERKUŞ B., Isik M., Eylem C. C., ERGİN İ., Camci C. B., Bilgin S., et al.
ADVANCED BIOLOGY , vol.6, no.6, 2022 (SCI-Expanded) identifier identifier identifier

Mitochondria-targeted CoQ(10) loaded PLGA-b-PEG-TPP nanoparticles: Their effects on mitochondrial functions of COQ8B(-/-) HK-2 cells

Sena Ozbay H., Yabanoglu-Ciftci S., Baysal I., Gultekinoglu M., Can Eylem C. C., Ulubayram K., et al.
EUROPEAN JOURNAL OF PHARMACEUTICS AND BIOPHARMACEUTICS , vol.173, pp.22-33, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

Liquid biopsy markers for early diagnosis of brain metastasis patients with breast cancer by metabolomics

Ozer O., NEMUTLU E., REÇBER T., Eylem C. C., AKTAŞ B. Y., KIR S., et al.
EUROPEAN JOURNAL OF MASS SPECTROMETRY , vol.28, no.1-2, pp.56-64, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

State-of-the-art GC-MS approaches for probing central carbon metabolism

Eylem C. C., REÇBER T., Waris M., KIR S., NEMUTLU E.
MICROCHEMICAL JOURNAL , vol.172, 2022 (SCI-Expanded) Sustainable Development identifier identifier

Mechanically robust hybrid hydrogels of photo-crosslinkable gelatin and laminin-mimetic peptide amphiphiles for neural induction

Isik M., Eylem C. C., Haciefendioglu T., YILDIRIM E., Sari B., NEMUTLU E., et al.
BIOMATERIALS SCIENCE , vol.9, pp.8270-8284, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

Neuroactivity of the naturally occurring aporphine alkaloid, roemerine

Bayazeid O., NEMUTLU E., Eylem C. C., Ilhan M., Kupeli-Akkol E., KARAHAN H., et al.
NATURAL PRODUCT RESEARCH , vol.35, no.24, pp.6147-6152, 2021 (SCI-Expanded) identifier identifier identifier

Decellularized spinal cord meninges extracellular matrix hydrogel that supports neurogenic differentiation and vascular structure formation

ÖZÜDOĞRU E., Isik M., Eylem C. C., NEMUTLU E., ARSLAN Y. E., Derkus B.
JOURNAL OF TISSUE ENGINEERING AND REGENERATIVE MEDICINE , vol.15, no.11, pp.948-963, 2021 (SCI-Expanded) identifier identifier identifier

Reduced mitochondrial fission and impaired energy metabolism in human primary skeletal muscle cells of Megaconial Congenital Muscular Dystrophy

AKSU MENGEŞ E., Eylem C. C., NEMUTLU E., Gizer M., KORKUSUZ P., Topaloglu H., et al.
SCIENTIFIC REPORTS , vol.11, no.1, 2021 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier

Salbutamol Delivered by Jet Nebulizer: Closed System Design and Impact of a Model Biofilm

ÖCAL S., ÖZEN S., NEMUTLU E., KART D., Eylem C. C., TOPELİ İSKİT A.
RESPIRATORY CARE , vol.66, no.9, pp.1440-1445, 2021 (SCI-Expanded) identifier identifier identifier

Gas chromatography-mass spectrometry based O-18 stable isotope labeling of Krebs cycle intermediates

Eylem C. C., BAYSAL İ., Erikci A., YABANOĞLU ÇİFTÇİ S., Zhang S., KIR S., et al.
ANALYTICA CHIMICA ACTA , vol.1154, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

An Overview of Green Chromatographic Analysis from Pharmaceutical Preparations

DOĞAN A., Eylem C. C., BAŞCI AKDUMAN N. E.
CURRENT ANALYTICAL CHEMISTRY , vol.17, no.9, pp.1260-1277, 2021 (SCI-Expanded) Sustainable Development identifier identifier

Neuroactivity of naturally occurring proaporphine alkaloid, pronuciferine

Bayazeid O., NEMUTLU E., Eylem C. C., Yalcin F. N.
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY , vol.34, no.12, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Polymeric Nanoparticle Versus Liposome Formulations: Comparative Physicochemical and Metabolomic Studies as l-Carnitine Delivery Systems

Yasacan M., Erikci A., Eylem C. C., Ciftci S. Y., NEMUTLU E., ULUBAYRAM K., et al.
AAPS PHARMSCITECH , vol.21, no.8, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Integration of GC-MS and LC-MS for untargeted metabolomics profiling

Zeki O. C., Eylem C. C., REÇBER T., KIR S., NEMUTLU E.
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS , vol.190, 2020 (SCI-Expanded) identifier identifier identifier

Application of green methodology to pharmaceutical analysis using eco-friendly ethanol-water mobile phases

DOĞAN A., Eylem C. C., BAŞCI AKDUMAN N. E.
MICROCHEMICAL JOURNAL , vol.157, 2020 (SCI-Expanded) identifier identifier

Untargeted multi-omic analysis of colorectal cancer-specific exosomes reveals joint pathways of colorectal cancer in both clinical samples and cell culture

Eylem C. C., YILMAZ M., DERKUŞ B., NEMUTLU E., Camci C. B., YILMAZ E., et al.
CANCER LETTERS , vol.469, pp.186-194, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

An LC-ESI-MS/MS method for the simultaneous determination of pronuciferine arid roemerine in some Papaver species

Bayazeid O., Eylem C. C., REÇBER T., YALÇIN F. N., KIR S., NEMUTLU E.
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES , vol.1096, pp.223-227, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier
Papers Presented at Peer-Reviewed Scientific Conferences 6

A mechanistic evaluation of the differential response of SW480 and SW620 colon carcinoma cell lines to L-Glutamine Starvation

GÜLEÇ TAŞKIRAN A. E., GÜDERER İ., EYLEM C. C., NEMUTLU E., BANERJEE S.
EACR Signaling Circuits, 13 February 2024, (Summary Text)

Impact of Distinct Bacterial Populations on Brain Organoid Phenotype

DERKUŞ B., IŞIK M., EYLEM C. C., EMREGÜL E., NEMUTLU E.
5th Eurasia Biochemical Approaches &amp; Technologies Congress (EBAT5), Antalya, Turkey, 2 - 05 November 2023, pp.70, (Summary Text)

Cardiopulmonary Bypass and Hypothermia-Induced Alterations in Plasma Metabolome Profile in Adult Cardiac Surgery

Durmaz O., EYLEM C. C., NEMUTLU E., EMREGÜL E., ÖZÇINAR E., DAĞ O., et al.
5th Eurasia Biochemical Approaches &amp; Technologies Congress (EBAT 5), Antalya, Turkey, 02 November 2023, pp.88, (Summary Text)

18O Assisted GC-MS Based Fluxomics Analysis for Central Carbon Metabolism Intermediates in Colorectal Cancer Cell Line

EYLEM C. C.
PBA2023 33rd International Symposium on Pharmaceutical and Biomedical Analysis, Ankara, Turkey, 2 - 06 July 2023, (Summary Text)

Pharmacometabolomics: The Bioavailability of Levetiracetam

Zeki Ö. C., EYLEM C. C., ILGAZ F., TİMUR S. S., EROĞLU ERDEM Ç., EROĞLU H., et al.
ASPAC 2022-11th Annual Symposium on Physical and Analytical Chemistry, Tiflis, Georgia, 08 December 2022, (Summary Text)

High Throughput Extraction Strategies for Cell Culture Medium-Based Untargeted Exometabolomics Studies

NEMUTLU E., REÇBER T., EYLEM C. C., ERDOĞAN KABLAN S., Özesen S., DERKUŞ B., et al.
2nd European Sample Preparation Conference (EuSP2022), Turkey, 14 - 16 March 2022, (Summary Text)
Books 2

Proteolytic digestion methods for shotgun proteomics

EYLEM C. C., NEMUTLU E.
in: Comprehensive Sampling and Sample Preparation, 2e, , Editor, Elsevier, pp.261-276, 2024

Liquid chromatography in proteomics research

KOÇAK E., EYLEM C. C., NEMUTLU E.
in: Liquid Chromatography, Salvatore Fanali, Paul R. Haddad, Marja-Liisa Riekkola, Bezhan Chankvetadze, Colin F. Poole, Editor, Elsevier, pp.331-356, 2023