Prof. YUSUF ÇETİN KOCAEFE

Publication Network

Journal articles indexed in SCI, SSCI, and AHCI

Pro-fibrogenic and adipogenic aspects of chronic muscle degeneration are contributed by distinct stromal cell subpopulations

ÖZDEMİR SAKA C., Akçay D., Yöyen-Ermiş D., Taşkıran E. Z., Soylu-Kucharz R., ESENDAĞLI G., et al.

PloS one , vol.18, no.7, 2023 (SCI-Expanded)

ACPA decreases non-small cell lung cancer line growth through Akt/PI3K and JNK pathways in vitro.

Boyacioglu O., BİLGİÇ E., VARAN C., BİLENSOY E., NEMUTLU E., GÜLMEZ SEVİM D., et al.

Cell death & disease , vol.12, no.1, pp.56, 2021 (SCI-Expanded)

A Novel Amplification-Refractory Mutation System-PCR Strategy to Screen MT-TL1 Pathogenic Variants in Patient Repositories

Bulduk B. K., Kilic H. B., Bekircan-Kurt C. E., Haliloglu G., ERDEM ÖZDAMAR S., Topaloglu H., et al.

GENETIC TESTING AND MOLECULAR BIOMARKERS , vol.24, no.3, pp.165-170, 2020 (SCI-Expanded)

A single-tube multiplex qPCR assay for mitochondria DNA (mtDNA) copy number assessment

Kilic H. B., Bulduk B. K., KOCAEFE Y. Ç.

TURKISH JOURNAL OF BIOCHEMISTRY-TURK BIYOKIMYA DERGISI , vol.44, no.6, pp.769-777, 2019 (SCI-Expanded)

Bone marrow derived mesenchymal stem cells ameliorate inflammatory response in an in vitro model of familial hemophagocytic lymphohistiocytosis 2

SEVİM H., KOCAEFE Y. Ç., ONUR M. A., Uckan-Cetinkaya D., GÜRPINAR Ö. A.

STEM CELL RESEARCH & THERAPY , vol.9, 2018 (SCI-Expanded)

GENERATION OF INDUCED PLURIPOTENT STEM CELLS FROM MESENCHYMAL STEM CELLS OF OSTEOPETROSIS PATIENTS BY TWO DIFFERENT INTEGRATION-FREE METHODS UNDER FEEDER-FREE CONDITIONS

Okur F. V., Cevher I., Kilic E., Ozdemir C., Kocaefe C., Cetinkaya D. U.

CYTOTHERAPY , vol.20, no.5, 2018 (SCI-Expanded)

Tenotomy immobilization as a model to investigate skeletal muscle fibrosis (with emphasis on Secreted frizzled-related protein 2)

AKPULAT U., ONBAŞILAR İ., KOCAEFE Y. Ç.

PHYSIOLOGICAL GENOMICS , vol.48, no.6, pp.397-408, 2016 (SCI-Expanded)

In Vitro Comparison of Adipokine Export Signals

Sharafi P., KOCAEFE Y. Ç.

PROTEIN AND PEPTIDE LETTERS , vol.23, no.6, pp.530-536, 2016 (SCI-Expanded)

Effect of Zoledronic Acid on Rats' Tissue SDF-1 Expression

Arik Z., KILIÇKAP S., AKPULAT U., Nahit Sendur M. A., KOCAEFE Y. Ç., ERMAN M.

UHOD-ULUSLARARASI HEMATOLOJI-ONKOLOJI DERGISI , vol.26, no.4, pp.215-219, 2016 (SCI-Expanded)

AEBP1/ACLP is upregulated in differentiation, injury repair and fibrotic degeneration of skeletal muscle

Özdemir C., AKPULAT U., Akçay D., ONBAŞILAR İ., KOCAEFE Y. Ç.

JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY , vol.36, no.6, pp.549-550, 2015 (SCI-Expanded)

Generation of targeted insertion in the Klf5 gene of mouse myoblasts (C2C12 cells) using CRISPR/Cas9 system

Akçay D., AKPULAT U., KOCAEFE Y. Ç.

JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY , vol.36, no.6, pp.547-548, 2015 (SCI-Expanded)

Periostin is temporally expressed as an extracellular matrix component in skeletal muscle regeneration and differentiation

OZDEMIR C., Akpulat U., SHARAFI P., YILDIZ Y., ONBAŞILAR İ., Kocaefe C.

GENE , vol.553, no.2, pp.130-139, 2014 (SCI-Expanded)

Coronin 1A inhibits neurite outgrowth in PC12 cells

TERZI Y. K., KOCAEFE Y. Ç., AYTER S.

NEUROSCIENCE LETTERS , vol.582, pp.38-42, 2014 (SCI-Expanded)

Novel mutations of the MLC1 gene in Turkish patients

YÜZBAŞIOĞLU A., TOPÇU M., KOCAEFE Y. Ç., ÖZGÜÇ M.

EUROPEAN JOURNAL OF MEDICAL GENETICS , vol.54, no.3, pp.281-283, 2011 (SCI-Expanded)

Reprogramming of Human Umbilical Cord Stromal Mesenchymal Stem Cells for Myogenic Differentiation and Muscle Repair

Kocaefe C., Balci D., Hayta B. B., Can A.

STEM CELL REVIEWS AND REPORTS , vol.6, no.4, pp.512-522, 2010 (SCI-Expanded)

Assessment of housekeeping genes for use in normalization of real time PCR in skeletal muscle with chronic degenerative changes

Yuzbasioglu A., Onbasilar I., Kocaefe C., Ozguc M.

EXPERIMENTAL AND MOLECULAR PATHOLOGY , vol.88, no.2, pp.326-329, 2010 (SCI-Expanded)

Histone Deacetylase Inhibition Activity and Molecular Docking of (E )-Resveratrol: Its Therapeutic Potential in Spinal Muscular Atrophy

Dayangac-Erden D., Bora G., Ayhan P., Kocaefe C., DALKARA S., Yelekci K., et al.

CHEMICAL BIOLOGY & DRUG DESIGN , vol.73, no.3, pp.355-364, 2009 (SCI-Expanded)

Adipocyte differentiation defect in mesenchymal stromal cells of patients with malignant infantile osteopetrosis

Uckan D., KILIÇ E., SHARAFI P., Kazik M., Kaya F. A., Erdemli E., et al.

CYTOTHERAPY , vol.11, no.4, pp.392-402, 2009 (SCI-Expanded)

Changes in the expression of selenoproteins in mesial temporal lobe epilepsy patients

YÜZBAŞIOĞLU A., Karatas H., GURSOY-OZDEMIR Y., Saygi S., Akalan N., Soylemezoglu F., et al.

Cellular and Molecular Neurobiology , vol.29, no.8, pp.1223-1231, 2009 (SCI-Expanded)

Functional structure of adipocytes differentiated from human umbilical cord stroma-derived stem cells

Karahuseyinoglu S., Kocaefe C., Balci D., Erdemli E., Can A.

STEM CELLS , vol.26, no.3, pp.682-691, 2008 (SCI-Expanded)

Statin potentiates human platelet eNOS activity without enhancing eNOS mRNA and protein levels

Yemisci M., AY H., Kocaefe C., Qui J., Topalkara K., ÖZGÜÇ M., et al.

CEREBROVASCULAR DISEASES , vol.26, no.2, pp.190-198, 2008 (SCI-Expanded)

Biology of stem cells in human umbilical cord stroma: In situ and in vitro surveys

Karahuseyinoglu S., Cinar O., Kilic E., Kara F., Akay G. G., Demiralp D. O., et al.

STEM CELLS , vol.25, no.2, pp.319-331, 2007 (SCI-Expanded)

Interleukin-10 gene transfer: Prevention of multiple organ injury in a murine cecal ligation and puncture model of sepsis

KABAY B., Kocaefe C., Baykal A., OEZDEN H., BAYCU C., ONER Z., et al.

WORLD JOURNAL OF SURGERY , vol.31, no.1, pp.105-115, 2007 (SCI-Expanded)

The Genetic Basis of the Polycystic Ovary Syndrome: A Literature Review Including Discussion of PPAR-gamma

UNLUTURK U., Harmanci A., Kocaefe C., YILDIZ B.

PPAR RESEARCH , vol.2007, 2007 (SCI-Expanded)

Liposome-mediated intraperitoneal interleukin 10 gene transfer increases survival in cecal ligation and puncture model of sepsis

Kabay B., Kocaefe Y. C., Baykal A., Ozguc M., SAYEK I.

SHOCK , vol.26, no.1, pp.37-40, 2006 (SCI-Expanded) Sustainable Development

Androgen receptor immunostaining and androgen receptor messenger ribonucleic acid expression are increased in cremaster muscles associated with undescended testis

Tanyel F. C., Yuzbasioglu A., Kocaefe C., Orhan D., Ozguc M.

UROLOGY , vol.67, no.4, pp.855-858, 2006 (SCI-Expanded)

Myogenic program induction in mature fat tissue (with MyoD expression)

Kocaefe Y. Ç., ISRAELI D., Ozguc M., DANOS O., GARCIA L.

EXPERIMENTAL CELL RESEARCH , vol.308, no.2, pp.300-308, 2005 (SCI-Expanded)

Four-month-old infant with focal segmental glomerulosclerosis and mitochondrial DNA deletion

Unal S., Kalkanoglu H., Kocaefe C., Gueer S., Ozen S., TURANLI G., et al.

JOURNAL OF CHILD NEUROLOGY , vol.20, no.1, pp.83-84, 2005 (SCI-Expanded)

Expression of matrix metalloproteinases in vasculitic neuropathy

Gurer G., Erdern S., Kocaefe C., Ozguc M., Tan E.

RHEUMATOLOGY INTERNATIONAL , vol.24, no.5, pp.255-259, 2004 (SCI-Expanded)

Four novel thymidine phosphorylase gene mutations in mitochondrial neurogastrointestinal encephalomyopathy syndrome (MNGIE) patients

Kocaefe Y. Ç., Erdem S., Ozguc M., Tan E.

EUROPEAN JOURNAL OF HUMAN GENETICS , vol.11, no.1, pp.102-104, 2003 (SCI-Expanded)

Calcium-antagonistic activity of sumatriptan in the rat anococcygeus muscle

Emre-Aydingoz S., Kocaefe C., Tuncer M.

PHARMACOLOGY , vol.64, no.1, pp.43-48, 2002 (SCI-Expanded)

Articles Published in Other Journals

Role of echocardiography on early diagnosis of atrial remodelling and fibrosis in elite athletes

YILDIRIM A., TOKGÖZOĞLU S. L., Yıldırım M., Şener Y. Z., OKŞUL M., Akçay D., et al.

International Journal of Cardiovascular Imaging , vol.39, no.7, pp.1299-1306, 2023 (Scopus)

Papers Presented at Peer-Reviewed Scientific Conferences

Serum Proteomic Signatures of Elite Athletes: Insights into Cardiovascular Health

KILIÇ H. B., ŞARDAN EKİZ M., ÇELİKBIÇAK Ö., TOKGÖZOĞLU S. L., KOCAEFE Y. Ç.

Uluslararası Proteomik Kongresi // 6. Ulusal Proteomik Kongresi, Kocaeli, Turkey, 11 - 12 October 2024, (Summary Text)

Serum Proteomic Signatures of Elite Athletes and Cancer Patients: Insights into Cardiovascular Health

KILIÇ H. B., ŞARDAN EKİZ M., ÇELİKBIÇAK Ö., TOKGÖZOĞLU S. L., KOCAEFE Y. Ç.

15th MaxQuant SummerSchool, Munich, Germany, 9 - 13 September 2024, (Summary Text)

RAB27A Gen Tedavisinin Olası Tümorijenik Etkilerinin İncelenmesi

EROL DUYAR Ö. D., ŞEKER M. E., PERVİN B., ÖZÇİMEN B., ŞENOCAK Ş., GİZER M., et al.

18. Tıbbi biyoloji ve genetik kongresi, 26 - 29 October 2023, vol.2, pp.15, (Summary Text)

In vitro Translasyon ile Ribozom İşlev Tayini

KILIÇ H. B., ÇETİNKAYA A., AKARSU A. N., KOCAEFE Y. Ç.

26. Ulusal Tıbbi Biyoloji ve Genetik Kongresi 2021, Turkey, 28 - 31 October 2021, vol.1, pp.277-278, (Full Text)

Sağlıkta ve Hastalıkta İskelet Kası Hücre Dışı Matriks’in Düzenlenmesinde TEAD Transkripsyon Faktörü Ailesinin Rolü ve Öneminin Multi-omik Yöntemlerle İncelenmesi

KILIÇ H. B., KOCAEFE Y. Ç.

26. Ulusal Tıbbi Biyoloji ve Genetik Kongresi 2021, Turkey, 28 - 31 October 2021, vol.1, pp.271-272, (Full Text)

Multiomic Meta-Analysis Identifies Common Players and Novel Regulators Modulating ECM In Skeletal Muscle

KILIÇ H. B., KOCAEFE Y. Ç.

Multiomics to Mechanisms: Challenges in Data Integration, Heidelberg, Germany, 15 - 17 September 2021, (Full Text)

Repair of Griscelli Type 2 mesenchymal stem cells with a lentiviral vector carrying RAB27Aco

Erol Ö. D., Şeker M. E., Pervin B., Van Til N. P., Günel_Özcan A., Kocaefe Y. Ç., et al.

İstiniye Üniversitesi Kök Hücre ve Doku Mühendisliği Sempozyumu, İstanbul, Turkey, 27 - 28 February 2021, (Summary Text)

İskelet Kası Fibrozisinde Yeni Bir Düzenleyici; Adipocyte Enhancer Binding Protein 1 (AEBP1)/Aortic Carboxypeptidase- Like Protein (ACLP)

Sevim D., KILIÇ H. B., KOCAEFE Y. Ç.

Tıbbi Biyoloji ve Genetik Kongresi'19, Muğla, Turkey, 27 October 2019, (Summary Text)

İskelet Kası Dejenerasyonu ve Fibrozis Sürecinde, Yeni Hücre Dışı Matris Bileşenleri, Düzenleyicileri ve Çözünebilir Faktörleri Tanımlamaya Yönelik Bütüncül Bir Biyoinformatik Meta-Analiz

KILIÇ H. B., KOCAEFE Y. Ç.

Tıbbi Biyoloji ve Genetik Kongresi'19, Muğla, Turkey, 27 October 2019, (Summary Text)

A novel ARMS-PCR assay for screening MT-TL1 mutations causing mitochondrial cytopathies

KILIÇ H. B., Bekircan Kurt C. E., HALİLOĞLU V. G., ERDEM ÖZDAMAR S., TOPALOĞLU H. A., KOCAEFE Y. Ç.

FEBS OPEN BIO, 1 - 11 June 2019, vol.9, pp.202, (Summary Text)

Characterization of the Cellular Localization andExpression of AEBP1/ACLP Transcripts with anUnknown Function in Myoblasts

kılıç h. b., akçay d., sevim d., ÖZDEMİR SAKA C., KOCAEFE Y. Ç.

Molbiokon18 6th International Congress of theMolecular Biology Association of Turkey, 5 - 08 September 2018, (Full Text)

Characterization of the Cellular Localization and Expression of AEBP1/ACLP Transcripts with an Unknown Function in Myoblasts

KILIÇ H. B., Akçay D., ÖZDEMİR SAKA C., KOCAEFE Y. Ç.

Molbiyokon’18, İzmir, Turkey, 05 September 2018, (Summary Text)

Assessment of the Role of Tgf-beta and 3D Echocardiographic Evaluation in the Early Diagnosis of Atrial Remodelling in Elite Athletes

YILDIRIM A., TOKGÖZOĞLU S. L., YILDIRIM M., KOCAEFE Y. Ç., DÖNMEZ G., ŞENER Y. Z., et al.

ESC Congress 2018, MUNCHEN, Germany, 25 - 29 August 2018, (Full Text)

The Fibrogenic Activation Kinetics of Stromal Stem Cells in Three Different Skeletal Muscle Degeneration Models

ÖZDEMİR SAKA C., AKÇAY D., YÖYEN ERMİŞ D., ESENDAĞLI G., KOCAEFE Y. Ç.

43rd FEBS CONGRESS, 7 - 12 July 2018, (Full Text)

Comparative Transcriptome Analysis of Distinct Stromal Cell Populations During Extracellular Matrix Remodeling in Skeletal Muscle

ÖZDEMİR SAKA C., AKÇAY D., YÖYEN ERMİŞ D., TAŞKIRAN Z. E., ESENDAĞLI G., KOCAEFE Y. Ç.

13th Meeting of the Mediterrranean Society of Myology, 27 - 29 June 2018, vol.37, pp.129-183, (Full Text)

GENERATION OF INDUCED PLURIPOTENT STEM CELLS FROMMESENCHYMAL STEM CELLS OF OSTEOPETROSIS PATIENTSBY TWO DIFFERENT INTEGRATION-FREE METHODS UNDERFEEDER-FREE CONDITIONS

OKUR F. V., CEVHER İ., KILIÇ E., ÖZDEMİR SAKA C., KOCAEFE Y. Ç., ÇETİNKAYA F. D.

ISCT, 2 - 05 May 2018, (Full Text)

Generation of targeted insertion in the Klf5 gene of mouse myoblasts (C2C12 cells) using CRISPR/Cas9 system

Akcay D., Kocaefe C.

41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey, 3 - 08 September 2016, vol.283, pp.129, (Summary Text)

AEBP1/ACLP is upregulated in differentiation, injury repair and fibrotic degeneration of skeletal muscle

Ozdemir C., Akpulat U., Onbasilar I., Kocaefe C.

41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey, 3 - 08 September 2016, vol.283, pp.287, (Summary Text)

Endocannabinoids And Their Receptors Are Located On Human Bone Marrow Niche Mesenchymal Stem And Hematopoietic Progenitor Cells

KÖSE S., AERTS KAYA F. S. F., AKAR İ., NEMUTLU E., KOCAEFE Y. Ç., ÇETİNKAYA F. D., et al.

ISSCR annual meeting 2015, 24 - 27 June 2015, (Summary Text)

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