Publications & Works

Articles Published in Journals That Entered SCI, SSCI and AHCI Indexes

S-alkylated thiosemicarbazone derivatives: Synthesis, crystal structure determination, antimicrobial activity evaluation and molecular docking studies

GÜNDÜZ M. G. , Kaya B., ÖZKUL KOÇAK C. , ŞAHİN O., Rekha E. M. , Sriram D., et al.
JOURNAL OF MOLECULAR STRUCTURE, vol.1242, 2021 (Journal Indexed in SCI) identifier identifier

Integrative proteomics and metabolomics approach to elucidate the antimicrobial effect of simvastatin on Escherichia coli

Kocak E., NEMUTLU E. , KIR S. , SAĞIROĞLU M. , ÖZKUL KOÇAK C.
BIOMEDICAL CHROMATOGRAPHY, 2021 (Journal Indexed in SCI) identifier identifier identifier

Copper-Oxone Promoted Oxidative C-H Functionalization: Synthesis of 2-Aminobenzothiazoles and Evaluation of Their Antimicrobial Activities

DOĞAN Ş. D. , GÜNDÜZ M. G. , Ugur S. B. , Dogan H., ÖZKUL KOÇAK C. , ÇETİNKAYA Y.
CHEMISTRYSELECT, vol.6, no.17, pp.4382-4389, 2021 (Journal Indexed in SCI) identifier identifier

Oxacillinase Gene Distribution, Antibiotic Resistance, and Their Correlation with Biofilm Formation inAcinetobacter baumanniiBloodstream Isolates

ÖZKUL KOÇAK C. , HAZIROLAN G.
MICROBIAL DRUG RESISTANCE, vol.27, pp.637-646, 2021 (Journal Indexed in SCI) identifier identifier identifier

Gut-brain-microbiota axis: Antibiotics and functional gastrointestinal disorders

KARAKAN T., ÖZKUL KOÇAK C. , Akkol E. K. , BİLİCİ S., Sobarzo-Sánchez E., Capasso R.
Nutrients, vol.13, no.2, pp.1-18, 2021 (Journal Indexed in SCI) identifier identifier identifier

Effects of endothelin receptor blockade and COX inhibition on intestinal I/R injury in a rat model: Experimental research

Ucar B. I. , Erikci A., Kosemehmetoglu K., Ozkul C. , Iskit A. B. , Ucar G. , et al.
INTERNATIONAL JOURNAL OF SURGERY, vol.83, pp.89-97, 2020 (Journal Indexed in SCI) identifier identifier identifier

Characterization of gut microbiota in polycystic ovary syndrome: Findings from a lean population

Mammadova G., ÖZKUL KOÇAK C. , YILMAZ IŞIKHAN S. , AÇIKGÖZ A. , YILDIZ O. B.
EUROPEAN JOURNAL OF CLINICAL INVESTIGATION, 2020 (Journal Indexed in SCI) identifier identifier identifier

1,3-Disubstituted urea derivatives: Synthesis, antimicrobial activity evaluation and in silico studies

GÜNDÜZ M. G. , Uğur S. B. , Güney F., Özkul C. , Krishna V. S. , Kaya S., et al.
BIOORGANIC CHEMISTRY, vol.102, 2020 (Journal Indexed in SCI) identifier identifier identifier

Development of besifloxacin HCl loaded nanofibrous ocular inserts for the treatment of bacterial keratitis: In vitro, ex vivo and in vivo evaluation

POLAT H. K. , Pehlivan S. B. , Ozkul C. , ÇALAMAK S. , Ozturk N. , AYTEKİN E. , et al.
INTERNATIONAL JOURNAL OF PHARMACEUTICS, vol.585, 2020 (Journal Indexed in SCI) identifier identifier identifier

A single early-in-life antibiotic course increases susceptibility to DSS-induced colitis

ÖZKUL KOÇAK C. , Ruiz V. E. , Battaglia T., Xu J., Roubaud-Baudron C., Cadwell K., et al.
GENOME MEDICINE, vol.12, no.1, 2020 (Journal Indexed in SCI) identifier identifier identifier

Structural changes in gut microbiome after Ramadan fasting: a pilot study

Ozkul C. , Yalinay M., Karakan T.
BENEFICIAL MICROBES, vol.11, no.3, pp.227-233, 2020 (Journal Indexed in SCI) identifier identifier identifier

Long-Term Effects of Early-Life Antibiotic Exposure on Resistance to Subsequent Bacterial Infection.

Roubaud-Baudron C., Ruiz V., Swan A., Vallance B., Ozkul C. , Pei Z., et al.
mBio, vol.10, 2019 (Journal Indexed in SCI) identifier identifier identifier

Islamic fasting leads to an increased abundance of Akkermansia muciniphila and Bacteroides fragilis group: A preliminary study on intermittent fasting

Ozkul C. , Yalinay M., Karakan T.
TURKISH JOURNAL OF GASTROENTEROLOGY, vol.30, no.12, pp.1030-1035, 2019 (Journal Indexed in SCI) identifier identifier identifier

Design, synthesis and computational analysis of novel acridine-(sulfadiazine/sulfathiazole) hybrids as antibacterial agents

GÜNDÜZ M. G. , Tahir M. N. , Armakovic S., Kocak C. , Armakovic S. J.
JOURNAL OF MOLECULAR STRUCTURE, vol.1186, pp.39-49, 2019 (Journal Indexed in SCI) identifier identifier

Determination of certain bacterial groups in gut microbiota and endotoxin levels in patients with nonalcoholic steatohepatitis

Ozkul C. , Yalinay M., Karakan T., Yilmaz G.
TURKISH JOURNAL OF GASTROENTEROLOGY, vol.28, no.5, pp.361-369, 2017 (Journal Indexed in SCI) identifier identifier identifier

Ag/silk fibroin nanofibers: Effect of fibroin morphology on Ag+ release and antibacterial activity

ÇALAMAK S. , AKSOY E. A. , Ertas N., ERDOĞDU C. , SAĞIROĞLU M. , ULUBAYRAM K.
EUROPEAN POLYMER JOURNAL, vol.67, pp.99-112, 2015 (Journal Indexed in SCI) identifier identifier

Silver nanoparticle containing silk fibroin bionanotextiles

ÇALAMAK S. , AKSOY E. A. , ERDOĞDU C. , SAĞIROĞLU M. , ULUBAYRAM K.
JOURNAL OF NANOPARTICLE RESEARCH, vol.17, no.2, 2015 (Journal Indexed in SCI) identifier identifier

Silk fibroin based antibacterial bionanotextiles as wound dressing materials

ÇALAMAK S. , Erdogdu C. , Ozalp M., ULUBAYRAM K.
MATERIALS SCIENCE & ENGINEERING C-MATERIALS FOR BIOLOGICAL APPLICATIONS, vol.43, pp.11-20, 2014 (Journal Indexed in SCI) identifier identifier identifier

Detection of cagA and vacA genotypes of Helicobacter pylori isolates from a university hospital in Ankara region, Turkey

Erdogdu C. , SARIBAŞ Z. , Yilmaz Y. A.
TURKISH JOURNAL OF MEDICAL SCIENCES, vol.44, no.1, pp.126-132, 2014 (Journal Indexed in SCI) identifier identifier

Articles Published in Other Journals

Comparative Proteomic Analysis of Escherichia coli Under Ofloxacin Stress

KOÇAK E. , ÖZKUL KOÇAK C.
TURKISH JOURNAL OF PHARMACEUTICAL SCIENCES, vol.18, no.2, pp.133-139, 2021 (Journal Indexed in ESCI) identifier identifier identifier

Short-term adaptive metabolic response of Escherichia coli to ciprofloxacin exposure

KOÇAK E. , ÖZKUL KOÇAK C.
ISTANBUL JOURNAL OF PHARMACY, vol.51, no.1, pp.79-84, 2021 (Journal Indexed in ESCI) identifier

COMPARISON OF BACTERIAL DNA EXTRACTION METHODS FROM STOOL SAMPLES FOR QUANTITATIVE REAL-TIME PCR ANALYSIS

ÖZKUL KOÇAK C.
Hacettepe Journal of Biology and Chemistry, vol.48, no.1, pp.41-48, 2020 (Other Refereed National Journals)

Metabolic response of Escherichia coli to subinhibitory concentration of ofloxacin

KOÇAK E. , ÖZKUL KOÇAK C.
JOURNAL OF RESEARCH IN PHARMACY, vol.24, no.4, pp.593-601, 2020 (Journal Indexed in ESCI) identifier identifier

Screening the antimicrobial effect of ferrocene-boronic acid on Pseudomonas aeruginosa using proteomics and metabolomics approach

Kocak E., Ozkul C. , TAŞKOR ÖNEL G., NEMUTLU E. , KIR S. , SAĞIROĞLU M.
JOURNAL OF RESEARCH IN PHARMACY, vol.24, no.6, pp.812-820, 2020 (Journal Indexed in ESCI) identifier identifier

Karbapeneme Dirençli Klebsiella pneumoniae Klinik İzolatlarındaKolistin Direnci

ÖZKUL KOÇAK C. , HAZIROLAN G.
Türk Mikrobiyoloji Cem Derg, vol.49, no.1, pp.17-23, 2019 (Other Refereed National Journals) Creative Commons License

Mikrobiyota Tanımlama Yöntemleri

ÖZKUL KOÇAK C. , YALINAY A. M.
Turkiye Klinikleri Gastroenterohepatology, vol.11, pp.5-11, 2018 (Other Refereed National Journals)

Refereed Congress / Symposium Publications in Proceedings

Seçici noradrenalin gerialım inhibitörü reboksetinin intestinal mikrobiyom üzerine etkisi

ÖZKUL KOÇAK C. , KARACA GENÇER H., AYDIN TEKİNKOCA S.
TMC 2020 Çevrim İçi Mikrobiyoloji Sempozyumu, Turkey, 27 December 2020

Structural changes in gut microbiome of diabetic mice after Reboxetin treatment

TEKİNKOCA S., ÖZKUL KOÇAK C. , KARACA GENÇER H.
HELICOBACTER, Innsbruck, Austria, 5 - 07 September 2019, vol.24

Compositional analysis of ocular surface microbiome in blepharitis

ÖZKUL KOÇAK C. , YALINAY A. M. , AKATA R. F.
HELICOBACTER, Innsbruck, Austria, 5 - 07 September 2019, vol.24

GUT MICROBIOME AND OBESITY ASSOCIATEDDISEASES: CURRENT PERSPECTIVE

ÖZKUL KOÇAK C.
International Multidisciplinary Symposium on Drug Research and Development, 1 - 03 July 2019

THE INTEGRATED PROTEOMICS AND METABOLOMICS ANALYSIS OFESCHERICHIA COLI UNDER OFLOXACIN STRESS

KOÇAK E. , ÖZKUL KOÇAK C.
International Multidisciplinary Symposium on Drug Research and Development, 1 - 03 July 2019

Kafeterya Diyeti İle Beslenen Anne Ratların Anne Sütü Alan Yavrularında MikrobiyotaDüzeylerinin İncelenmesi

ADİLOĞLU A. K. , Teker T., ÖZKUL KOÇAK C. , YALINAY A. M. , Öztürk B., EYERCİ N.
Türk Mikrobiyoloji Kongresi XXXVIII International Uluslararası Turkish Microbiology Congress, 4 - 08 November 2018

Oruç tutan bireylerde oruç öncesi ve sonrası bağırsak mikrobiyotası farklılıklarının metagenomik olarak incelenmesi

ÖZKUL KOÇAK C. , YALINAY A. M. , KARAKAN T.
5. Ulusal Bağırsak Mikrobiyotası ve probiyotik Kongresi, Turkey, 11 - 14 October 2018

Mikropipette Mikrobiyota:Analiz Yöntemleri

ÖZKUL KOÇAK C.
İnönü Üniversitesi bilimsel Araştırma topluluğu 5.Ulusal Tıp Öğrenci Kongresi, Turkey, 27 April 2018

Bağırsak Mikrobiyotası ve Metagenomik Yaklaşım

ÖZKUL KOÇAK C.
4. Ulusal Klinik Mikrobiyoloji Kongresi, Antalya, Turkey, 8 - 12 November 2017

Effect of microbial restoration after early-life antibiotic treatment on intestinal microbial communities and on host gene expression and function

Ruiz V., Battaglia T., ERDOĞDU C. , Blaser M. J.
50th Annual MACUB Conference, 28 October 2017

Effect of single early-in-life antibiotic course on microbial community structure and susceptibility to DSS-induced colitis

Ozkul C. , Ruiz V., Battaglia T., Cadwell K., Blaser M.
30th International Workshop of the European-Helicobacter-and-Microbiota-Study-Group (EHMSG) on Helicobacter and Microbiota in Inflammation and Cancer, Bordeaux, France, 7 - 09 September 2017, vol.22 identifier

Polycationic Polymeric Brush Decoration on Polyurethane for Dual Effective Antibacterial Activity

GÜLTEKİNOĞLU M., sarısözen y. t. , ERDOĞDU C. , SAĞIROĞLU M. , Oh Y. J. , Hinterdorfer P., et al.
46th IUPAC WORLD POLYMER CONGRESS, 17 - 21 July 2016

Polycationic Polymeric Brush Decoration on Polyurethane Dual Effective Antibacterial Activity

GÜLTEKİNOĞLU M., TUNÇ SARISÖZEN Y., ERDOĞDU C. , SAĞIROĞLU M. , JIN OH Y., HINTERDORFER P., et al.
46th IUPAC World Polymer Congress MACRO2016, Turkey, 17 - 21 July 2016

Gut Microbiota in Patients with Non Alcoholic Fatty Liver Disease

ERDOĞDU C. , YALINAY A. M. , KARAKAN T.
ASM Microbe, 16 - 20 June 2016

Antioxidant antimicrobial activities and total phenolic content of Prunus spinosa L subsp dasyphylla Schur Domin and its secondary metabolites

ÇANKAYA İ. İ. , Anul S., EKİZOĞLU M. , ERDOĞDU C. , ÇİÇEK POLAT D., COŞKUN M.
2nd International Conference and Exhibition on Pharmacognosy, Phytochemistry & Natural Products, 25 - 27 August 2014

Biological activities and phytochemical analysis of Prunus spinosa L subsp dasyphylla Schur Domin

ÇANKAYA İ. İ. , Anul S., EKİZOĞLU M. , ERDOĞDU C.
9th International Symposium on Chromatography of Natural Products, 26 - 29 May 2014

Bazı Scutellaria türlerinin antimikrobiyal aktiviteleri

ZC A., ERDOĞDU C. , RENDA G., EKİZOĞLU M. , Ezer N.
20. Bitkisel İlaç Hammaddeleri Toplantısı, Turkey, 10 - 13 October 2012

Prunus spinosa L subsp Dasyphylla Schur domin türünün radikal süpürücü ve antimikrobiyal aktiviteleri ve total fenol içeriği

Serap A., ÇANKAYA İ. İ. , EKİZOĞLU M. , ERDOĞDU C. , Polat Ç., COŞKUN M.
20. Bitkisel İlaç Hammaddeleri Toplantısı, Turkey, 10 - 13 October 2012

An investigation of disinfectant resistance gene in hospital isolated gram negative bacteria Microbes in Applied Research Current Advances and Challenges 461 463 Supp olarak basılı

KART D. , EKİZOĞLU M. , Özkul C. , GÜLMEZ KIVANÇ D. , SAĞIROĞLU M.
IV International Conference on Environmental, Industrial and Applied Microbiology, Malaga, Spain, 14 - 16 October 2011, pp.461-463

Detection of H. pylori vacA and cagA Virulence Genotypes by PCR

ÖZKUL KOÇAK C. , Saribas Z., Yilmaz Y.
22nd International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, Oporto, Portugal, 17 - 19 September 2009, vol.14, pp.376 identifier

Books & Book Chapters

Mikrobiyota Tanımlama Yöntemleri

ÖZKUL KOÇAK C. , YALINAY A. M.
in: Türkiye Klinikleri Gastroenteropatoloji Özel Konular - Bağırsak Mikrobiyotası, Prof. Dr. Hakan Alagözlü, Editor, Türkiye Klinikleri (Ortadoğu Reklam Tanıtım Yayıncılık Turizm Eğitim İnşaat Sanayi ve Ticaret A.Ş.), Ankara, pp.5-11, 2018

Mikrobiyolojik Yöntemler

ERYILMAZ M., DEMİRTAŞ A., ERAÇ B., TAŞLI H., EKİZOĞLU M. , KART D. , et al.
in: Türk Farmakopesi 2017, , Editor, T.C. Sağlık Bakanlığı Türkiye İlaç ve Tıbbi Cihaz Kurumu, 2018

Nonfermenterlerin İzolasyonu İçin Öneriler En Sık Rastlanan Türlerin Tanımlanması

ÖZKUL KOÇAK C.
in: Koneman’s Color Atlas andTextbook of Diagnostic Microbiology, Ahmet Başustaoğlu, Ayşe Dürdal Us, Editor, Hipokrat Yayınevi, pp.389, 2017