Assoc. Prof. CEREN ÖZKUL KOÇAK

Publication Network

Journal articles indexed in SCI, SSCI, and AHCI 28

Exploring bisbenzimidazole-chalcone hybrid compounds: Dual-action as antibacterial agents targeting biofilm formation and E. coli DNA gyrase inhibition

Adal E., Oksuz Z., ÖZKUL KOÇAK C., NİGİZ Ş., Alagoz M. A., DÖĞEN A., et al.

JOURNAL OF MOLECULAR STRUCTURE , 2025 (SCI-Expanded)

Molecular characterization and antibiotic resistance of clinical<i> Bacteroides</i> and related genera from a tertiary care center in Turkiye

DEMİR M., Soki J., Tanriverdi E. S., ÖZKUL KOÇAK C., Mahmood B., OTLU B., et al.

ANAEROBE , vol.90, 2024 (SCI-Expanded)

Alteration in gut microbial characteristics of patients with acromegaly.

Babayeva A., Ozkul C., Coskun M., Uzun A., Yalcin M. M., Yalinay M., et al.

Endocrine , vol.85, pp.855-863, 2024 (SCI-Expanded)

In Vivo Comparison of the Efficacy and Duration of Local Antibiotics on Smooth, Textured and Polyurethane Implant Surfaces.

Karakas E., Ayhan M. S., Karasu O., Kocak C., Yalinay M.

Aesthetic plastic surgery , 2024 (SCI-Expanded)

Inulin protects against the harmful effects of dietary emulsifiers on mice gut microbiome.

Bekar C., Ozmen O., Ozkul C., Ayaz A.

PeerJ , vol.12, 2024 (SCI-Expanded)

Determination of oral and gut mucosal microbiome profiles of patients with treatment-naïve ulcerative colitis

Karakan T., Kurtulus N. O., ÜNSAL F. B., İŞLER S. Ç., Akca G., Soysal F., et al.

JOURNAL OF CROHNS & COLITIS , 2024 (SCI-Expanded)

Electrochemical biosensors for rapid diagnosis of bacterial infections: Design, targets and applications in clinical setting

Koçak E., ÖZKUL KOÇAK C., BOZAL PALABIYIK B., SÜSLÜ İ., USLU B.

Electroanalysis , vol.35, no.11, 2023 (SCI-Expanded)

Crohn’s Disease Prediction Using Sequence Based Machine Learning Analysis of Human Microbiome

ÜNAL M., BOSTANCI G. E., ÖZKUL KOÇAK C., AÇICI K., Asuroglu T., GÜZEL M. S.

Diagnostics , vol.13, no.17, 2023 (SCI-Expanded)

Evaluation of In Vitro Activity of Ceftolozane/Tazobactam and Ceftazidime/Avibactam Against Carbapenem-Resistant Pseudomonas aeruginosa Strains and Mechanisms of Carbapenem Resistance: Data from Tertiary Care Hospital

HAZIROLAN G., ÖZKUL KOÇAK C.

Jundishapur Journal of Microbiology , vol.16, no.3, 2023 (SCI-Expanded)

Exometabolomic analysis of susceptible and multi-drug resistant Pseudomonas aeruginosa

Koçak E., Nigiz Ş., Özkan E., Erdoğan Kablan S., Hazirolan G., Nemutlu E., et al.

LETTERS IN APPLIED MICROBIOLOGY , vol.75, no.2, pp.234-242, 2022 (SCI-Expanded) Sustainable Development

First Report of Plasmid-Mediated fosA6 Harboring Klebsiella Pneumoniae Isolate in Turkey

HAZIROLAN G., ÖZKUL KOÇAK C.

Clinical Laboratory , vol.68, no.11 November, pp.2428-2429, 2022 (SCI-Expanded)

Integrative proteomics and metabolomics approach to elucidate the antimicrobial effect of simvastatin on Escherichia coli

Kocak E., NEMUTLU E., KIR S., SAĞIROĞLU M., ÖZKUL KOÇAK C.

BIOMEDICAL CHROMATOGRAPHY , vol.35, no.10, 2021 (SCI-Expanded)

Gut Microbiome Alteration after Reboxetine Administration in Type-1 Diabetic Rats

Aydin S., ÖZKUL KOÇAK C., Yucel N. T., KARACA GENÇER H.

MICROORGANISMS , vol.9, no.9, 2021 (SCI-Expanded)

Oxacillinase Gene Distribution, Antibiotic Resistance, and Their Correlation with Biofilm Formation inAcinetobacter baumanniiBloodstream Isolates

ÖZKUL KOÇAK C., HAZIROLAN G.

MICROBIAL DRUG RESISTANCE , vol.27, pp.637-646, 2021 (SCI-Expanded)

Characterization of gut microbiota in polycystic ovary syndrome: Findings from a lean population

Mammadova G., ÖZKUL KOÇAK C., YILMAZ IŞIKHAN S., AÇIKGÖZ A., YILDIZ O. B.

EUROPEAN JOURNAL OF CLINICAL INVESTIGATION , vol.51, no.4, 2021 (SCI-Expanded) Sustainable Development

Gut-brain-microbiota axis: Antibiotics and functional gastrointestinal disorders

KARAKAN T., ÖZKUL KOÇAK C., Akkol E. K., BİLİCİ S., Sobarzo-Sánchez E., Capasso R.

Nutrients , vol.13, no.2, pp.1-18, 2021 (SCI-Expanded)

Effects of endothelin receptor blockade and COX inhibition on intestinal I/R injury in a rat model: Experimental research

Ucar B. I., Erikci A., Kosemehmetoglu K., Ozkul C., Iskit A. B., Ucar G., et al.

INTERNATIONAL JOURNAL OF SURGERY , vol.83, pp.89-97, 2020 (SCI-Expanded)

Development of besifloxacin HCl loaded nanofibrous ocular inserts for the treatment of bacterial keratitis: In vitro, ex vivo and in vivo evaluation

POLAT H. K., Pehlivan S. B., Ozkul C., ÇALAMAK S., Ozturk N., AYTEKİN E., et al.

INTERNATIONAL JOURNAL OF PHARMACEUTICS , vol.585, 2020 (SCI-Expanded)

A single early-in-life antibiotic course increases susceptibility to DSS-induced colitis

ÖZKUL KOÇAK C., Ruiz V. E., Battaglia T., Xu J., Roubaud-Baudron C., Cadwell K., et al.

GENOME MEDICINE , vol.12, no.1, 2020 (SCI-Expanded)

Structural changes in gut microbiome after Ramadan fasting: a pilot study

Ozkul C., Yalinay M., Karakan T.

BENEFICIAL MICROBES , vol.11, no.3, pp.227-233, 2020 (SCI-Expanded) Sustainable Development

Long-Term Effects of Early-Life Antibiotic Exposure on Resistance to Subsequent Bacterial Infection.

Roubaud-Baudron C., Ruiz V., Swan A., Vallance B., Ozkul C., Pei Z., et al.

mBio , vol.10, 2019 (SCI-Expanded)

Islamic fasting leads to an increased abundance of Akkermansia muciniphila and Bacteroides fragilis group: A preliminary study on intermittent fasting

Ozkul C., Yalinay M., Karakan T.

TURKISH JOURNAL OF GASTROENTEROLOGY , vol.30, no.12, pp.1030-1035, 2019 (SCI-Expanded)

Design, synthesis and computational analysis of novel acridine-(sulfadiazine/sulfathiazole) hybrids as antibacterial agents

GÜNDÜZ M. G., Tahir M. N., Armakovic S., Kocak C., Armakovic S. J.

JOURNAL OF MOLECULAR STRUCTURE , vol.1186, pp.39-49, 2019 (SCI-Expanded)

Determination of certain bacterial groups in gut microbiota and endotoxin levels in patients with nonalcoholic steatohepatitis

Ozkul C., Yalinay M., Karakan T., Yilmaz G.

TURKISH JOURNAL OF GASTROENTEROLOGY , vol.28, no.5, pp.361-369, 2017 (SCI-Expanded)

Ag/silk fibroin nanofibers: Effect of fibroin morphology on Ag+ release and antibacterial activity

ÇALAMAK S., AKSOY E. A., Ertas N., ERDOĞDU C., SAĞIROĞLU M., ULUBAYRAM K.

EUROPEAN POLYMER JOURNAL , vol.67, pp.99-112, 2015 (SCI-Expanded)

Silver nanoparticle containing silk fibroin bionanotextiles

ÇALAMAK S., AKSOY E. A., ERDOĞDU C., SAĞIROĞLU M., ULUBAYRAM K.

JOURNAL OF NANOPARTICLE RESEARCH , vol.17, no.2, 2015 (SCI-Expanded)

Silk fibroin based antibacterial bionanotextiles as wound dressing materials

ÇALAMAK S., Erdogdu C., Ozalp M., ULUBAYRAM K.

MATERIALS SCIENCE & ENGINEERING C-MATERIALS FOR BIOLOGICAL APPLICATIONS , vol.43, pp.11-20, 2014 (SCI-Expanded) Sustainable Development

Detection of cagA and vacA genotypes of Helicobacter pylori isolates from a university hospital in Ankara region, Turkey

Erdogdu C., SARIBAŞ Z., Yilmaz Y. A.

TURKISH JOURNAL OF MEDICAL SCIENCES , vol.44, no.1, pp.126-132, 2014 (SCI-Expanded)

Articles Published in Other Journals 3

Comparative Proteomic Analysis of Escherichia coli Under Ofloxacin Stress

KOÇAK E., ÖZKUL KOÇAK C.

TURKISH JOURNAL OF PHARMACEUTICAL SCIENCES , vol.18, no.2, pp.133-139, 2021 (ESCI)

Karbapeneme Dirençli Klebsiella pneumoniae Klinik İzolatlarındaKolistin Direnci

ÖZKUL KOÇAK C., HAZIROLAN G.

Türk Mikrobiyoloji Cem Derg , vol.49, no.1, pp.17-23, 2019 (Peer-Reviewed Journal)

Mikrobiyota Tanımlama Yöntemleri

ÖZKUL KOÇAK C., YALINAY A. M.

Turkiye Klinikleri Gastroenterohepatology , vol.11, pp.5-11, 2018 (Peer-Reviewed Journal)

Papers Presented at Peer-Reviewed Scientific Conferences 41

Taguchi ve Faktöriyel Deney Tasarım Metotlarının Karşılaştırması: Lactobacillus spp. ERIC-PCR Optimizasyonu Örneği

YILMAZ IŞIKHAN S., ÖZKUL KOÇAK C.

23. Ulusal ve 6. Uluslararası Biyoistatistik Kongresi, Ankara, Turkey, 26 October 2022, (Full Text)

Mikrobiyom Verilerinde Kullanılan İstatistiksel Analizler: Obezite İlişkili Mikrobiyom Sekans Verisi Üzerinde bir Uygulama

YILMAZ IŞIKHAN S., ÖZKUL KOÇAK C.

22. Ulusal ve 5. Uluslararası Biyoistatistik Kongresi, Ankara, Turkey, 28 - 30 October 2021, (Full Text)

Seçici noradrenalin gerialım inhibitörü reboksetinin intestinal mikrobiyom üzerine etkisi

ÖZKUL KOÇAK C., KARACA GENÇER H., AYDIN TEKİNKOCA S.

TMC 2020 Çevrim İçi Mikrobiyoloji Sempozyumu, Turkey, 27 December 2020, (Summary Text)

Investigation of clonal relationship, carbapenemases and colistin resistance in multi drug resistant Acinetobacter baumannii clinical isolates

ÖZKUL KOÇAK C.

International Euroasian Conference on Biotechnology and Biochemistry, Ankara, Turkey, 16 February 2020, (Summary Text)

Structural changes in gut microbiome of diabetic mice after Reboxetin treatment

TEKİNKOCA S., ÖZKUL KOÇAK C., KARACA GENÇER H.

HELICOBACTER, Innsbruck, Austria, 5 - 07 September 2019, vol.24, (Summary Text) Sustainable Development

Compositional analysis of ocular surface microbiome in blepharitis

ÖZKUL KOÇAK C., YALINAY A. M., AKATA R. F.

HELICOBACTER, Innsbruck, Austria, 5 - 07 September 2019, vol.24, (Summary Text)

THE INTEGRATED PROTEOMICS AND METABOLOMICS ANALYSIS OFESCHERICHIA COLI UNDER OFLOXACIN STRESS

KOÇAK E., ÖZKUL KOÇAK C.

International Multidisciplinary Symposium on Drug Research and Development, 1 - 03 July 2019, (Full Text)

GUT MICROBIOME AND OBESITY ASSOCIATEDDISEASES: CURRENT PERSPECTIVE

ÖZKUL KOÇAK C.

International Multidisciplinary Symposium on Drug Research and Development, 1 - 03 July 2019, (Full Text) Sustainable Development

Evaluation of Antimicrobial Effect of Simvastatin on E. coli with Metabolomics Analysis

KOÇAK E., ÖZKUL KOÇAK C., KAPLAN O., ÇELEBİER M., NEMUTLU E., KIR S., et al.

1st International Congress on Analytical and Bioanalytical Chemistry, Antalya, Turkey, 27 March 2019, (Full Text)

Kafeterya Diyeti İle Beslenen Anne Ratların Anne Sütü Alan Yavrularında MikrobiyotaDüzeylerinin İncelenmesi

ADİLOĞLU A. K., Teker T., ÖZKUL KOÇAK C., YALINAY A. M., Öztürk B., EYERCİ N.

Türk Mikrobiyoloji Kongresi XXXVIII International Uluslararası Turkish Microbiology Congress, 4 - 08 November 2018, (Summary Text)

Oruç tutan bireylerde oruç öncesi ve sonrası bağırsak mikrobiyotası farklılıklarının metagenomik olarak incelenmesi

ÖZKUL KOÇAK C., YALINAY A. M., KARAKAN T.

5. Ulusal Bağırsak Mikrobiyotası ve probiyotik Kongresi, Turkey, 11 - 14 October 2018, (Full Text)

Determination of acid dissocition constant and antimicrobial activity of condensed 1,4 dihydropyridine derivatives

ÖZKUL KOÇAK C., KOÇAK E.

12 th International symposium on pharmaceutical sciences, 26 June 2018, (Summary Text)

Mikropipette Mikrobiyota:Analiz Yöntemleri

ÖZKUL KOÇAK C.

İnönü Üniversitesi bilimsel Araştırma topluluğu 5.Ulusal Tıp Öğrenci Kongresi, Turkey, 27 April 2018, (Full Text)

Bağırsak Mikrobiyotası ve Metagenomik Yaklaşım

ÖZKUL KOÇAK C.

4. Ulusal Klinik Mikrobiyoloji Kongresi, Antalya, Turkey, 8 - 12 November 2017, (Full Text)

Effect of microbial restoration after early-life antibiotic treatment on intestinal microbial communities and on host gene expression and function

Ruiz V., Battaglia T., ERDOĞDU C., Blaser M. J.

50th Annual MACUB Conference, 28 October 2017, (Full Text)

Obezitede Bağırsak Mikrobiyota Metagenom Analizleri

ÖZKUL KOÇAK C., YALINAY A. M., KARAKAN T., Battaglia T., Blaser M. J.

4. Ulusal Bağırsak Mikrobiyotası ve Probiyotik Kongresi, Antalya, Turkey, 19 October 2017, (Summary Text)

Açlık Süreçlerinin Etkisini Göstermek Amacıyla Oruç Tutan Bireylerde Bağırsak Mikrobiyota Analizleri

ERDOĞDU C., KARAKAN T., YALINAY A. M.

4. Ulusal Bağırsak Mikrobiyotası ve Probiyotik Kongresi, Turkey, 19 - 22 October 2017, (Summary Text)

Determination of Antimicrobial Activity of Some Probiotic Preparations and A. muciniphila against enteric pathogens

SAĞIROĞLU M., ÖZKUL KOÇAK C.

International Multidisciplinry Symposium on Drug Research and Development, 5 - 07 October 2017, (Summary Text)

Bacteriome and mycobiome analysis underscore the role of fungal dybiosis in nonalcoholic steatohepatitis: Fusarium genus as a novel player?

KARAKAN T., YALINAY A. M., ERDOĞDU C.

XXXth International Workshop on Helicobacter Microbiota in Inflammation Cancer, Bordeaux, France, 6 - 09 September 2017, vol.22, (Summary Text)

Effect of single early-in-life antibiotic course on microbial community structure and susceptbility to DSS-induced colitis

ERDOĞDU C., Ruiz V., Battaglia T., Blaser M. J., Cadwell K.

XXXth International Workshop on Helicobacter Microbiota in Inflammation Cancer, 7 - 09 September 2017, (Summary Text)

Effect of single early-in-life antibiotic course on microbial community structure and susceptibility to DSS-induced colitis

Ozkul C., Ruiz V., Battaglia T., Cadwell K., Blaser M.

30th International Workshop of the European-Helicobacter-and-Microbiota-Study-Group (EHMSG) on Helicobacter and Microbiota in Inflammation and Cancer, Bordeaux, France, 7 - 09 September 2017, vol.22, (Summary Text)

Restoring mirobial communities and host phenotypes after early-life pulsed antibiotic treatment

Ruiz V., Battaglia T., Mericien V., ERDOĞDU C., Blaser M. J.

Keystone-Microbiome in Health and Disease, 5 - 09 February 2017, (Summary Text)

Restoring mirobial communities and host phenotypes after early-life pulsed antibiotic treatment

Ruiz V., Battaglia T., Mericien V., ERDOĞDU C., Blaser M. J.

Keystone-Microbiome in Health and Disease, 5 - 09 February 2017, (Summary Text)

İnflamatuvar Bağırsak Hastalıkları ve Erken Dönem Antibiyotik Kullanımı

ERDOĞDU C.

1. Ulusal Mikrobiyota Kongresi ve Sağlığımıza Etkileri, Turkey, 8 - 10 December 2016, (Full Text)

NONALKOLİK KARACİĞER YAĞLANMASI OLAN HASTALARDA BARSAK MİKROBİYOTASININ YENİ NESİL DİZİ ANALİZİ İLE KARŞILAŞTIRILMASI

ERDOĞDU C., YALINAY A. M., KARAKAN T., Blaser M. J., Battaglia T.

Türk Mikrobiyoloji Kongresi, Turkey, 16 - 21 November 2016, (Full Text)

Polycationic Polymeric Brush Decoration on Polyurethane for Dual Effective Antibacterial Activity

GÜLTEKİNOĞLU M., sarısözen y. t., ERDOĞDU C., SAĞIROĞLU M., Oh Y. J., Hinterdorfer P., et al.

46th IUPAC WORLD POLYMER CONGRESS, 17 - 21 July 2016, (Full Text)

Polycationic Polymeric Brush Decoration on Polyurethane Dual Effective Antibacterial Activity

GÜLTEKİNOĞLU M., TUNÇ SARISÖZEN Y., ERDOĞDU C., SAĞIROĞLU M., JIN OH Y., HINTERDORFER P., et al.

46th IUPAC World Polymer Congress MACRO2016, Turkey, 17 - 21 July 2016, (Summary Text)

Dominant Bifidobacterium and Lactobacillus Species in Patients with Non alcoholic Fatty Liver Disease

ERDOĞDU C., YALINAY A. M., KARAKAN T.

ASM Microbe, 16 - 20 June 2016, (Full Text)

Increased Akkermansia muciniphila and Bacteroides fragilis Group Abundance After Islamic Fasting

ERDOĞDU C., YALINAY A. M., KARAKAN T.

ASM Microbe, 16 - 20 June 2016, (Full Text)

Gut Microbiota in Patients with Non Alcoholic Fatty Liver Disease

ERDOĞDU C., YALINAY A. M., KARAKAN T.

ASM Microbe, 16 - 20 June 2016, (Full Text)

Effect of early life antibiotic treatment on severity of DSS induced colitis

ERDOĞDU C., RUIZ V., BLASER M. J.

Department of Medicine 14th Annual Research Day, 26 May 2016, (Full Text)

Non Alkolik Karaciğer Yağlanması Olan Hastalarda Barsak Mikrobiyotası

ERDOĞDU C., ÇIRAK A. M., KARAKAN T.

3. Ulusal Klinik Mikrobiyoloji Kongresi, Antalya, Turkey, 18 - 22 November 2015, (Summary Text)

Akkermansia muciniphila ATCC BAA-835 suşunda genom boyu in silico analiz ile bakteriyosin varlığının araştırılması ve in-vitro antimikrobiyal aktivitesinin belirlenmesi

ÖZKUL KOÇAK C., Dündar H., YALINAY A. M.

XXXVI. Türk Mikrobiyoloji Kongresi, Antalya, Turkey, 12 November 2014, (Summary Text)

Antioxidant antimicrobial activities and total phenolic content of Prunus spinosa L subsp dasyphylla Schur Domin and its secondary metabolites

ÇANKAYA İ. İ., Anul S., EKİZOĞLU M., ERDOĞDU C., ÇİÇEK POLAT D., COŞKUN M.

2nd International Conference and Exhibition on Pharmacognosy, Phytochemistry & Natural Products, 25 - 27 August 2014

Biological activities and phytochemical analysis of Prunus spinosa L subsp dasyphylla Schur Domin

ÇANKAYA İ. İ., Anul S., EKİZOĞLU M., ERDOĞDU C.

9th International Symposium on Chromatography of Natural Products, 26 - 29 May 2014

Prunus spinosa L subsp Dasyphylla Schur domin türünün radikal süpürücü ve antimikrobiyal aktiviteleri ve total fenol içeriği

Serap A., ÇANKAYA İ. İ., EKİZOĞLU M., ERDOĞDU C., Polat Ç., COŞKUN M.

20. Bitkisel İlaç Hammaddeleri Toplantısı, Turkey, 10 - 13 October 2012

Helicobacter pylori cagA geni ve vacA alellik tiplerinin genomik incelenmesi

ÖZKUL KOÇAK C., YALINAY A. M., AKYÖN YILMAZ Y.

1. Ulusal Klinik Mikrobiyoloji Kongresi, Antalya, Turkey, 13 November 2011, (Summary Text)

An investigation of disinfectant resistance gene in hospital isolated gram negative bacteria Microbes in Applied Research Current Advances and Challenges 461 463 Supp olarak basılı

KART D., EKİZOĞLU M., Özkul C., GÜLMEZ KIVANÇ D., SAĞIROĞLU M.

IV International Conference on Environmental, Industrial and Applied Microbiology, Malaga, Spain, 14 - 16 October 2011, pp.461-463, (Summary Text)

Detection of H. pylori vacA and cagA Virulence Genotypes by PCR

ÖZKUL KOÇAK C., Saribas Z., Yilmaz Y.

22nd International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, Oporto, Portugal, 17 - 19 September 2009, vol.14, pp.376, (Summary Text)

Sterilizasyon Öncesi Dezenfeksiyon Gerekliliği

Usta A., Ünal S., ATAÇ A. S., ÖZKUL KOÇAK C., MİRZA H. C.

6. Ulusal Sterilizasyon Dezenfeksiyon Kongresi, Antalya, Turkey, 1 - 05 April 2009, (Summary Text)

Genotyping of cagA and vacA of H. pylori isolates from patients with gastrointestinal diseases

SARIBAŞ Z., ÖZKUL KOÇAK C., AKYÖN YILMAZ Y.

XXIst International Workshop on Helicobacter and related bacteria in chronic digestive inflammation, Riga, Latvia, 18 September 2008, (Summary Text)

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