Wholemeal samples were obtained from five durum wheat cultivars at two different bug (Eurygaster spp.) damage levels (medium and high damage). The samples were incubated (60 and 120 min) and used in size exclusion high performance liquid chromatography (SE-HPLC) analyses. The results showed that the amount of larger polymeric protein (TP1) and smaller polymeric protein (TP2) obtained from total (sodium dodecyl sulfate soluble) proteins decreased significantly in the bug-damaged samples, while the amount of total larger monomeric proteins (TP3) increased. The polymeric/monomeric protein ratio of all cultivars decreased at 60 min of incubation with increasing damage level. For all cultivars, the ratio of unextractable polymeric protein (UPP%) significantly decreased at 60 min of incubation except cv. Diyarbakir. The results suggested that bug protease caused depolymerization and/or disaggregation of polymeric proteins to lower their average molecular size. The changes in protein structure as determined using SE-HPLC supported by the decreases in gluten content and gluten index values which decreased with suni-bug damage. Deteriorative effects of bug damage on durum wheat quality were found to be quite similar to those on bread wheats.