A weakly nonlinear stability analysis is performed to search for the effects of compressibility on a mode of instability of the three-dimensional boundary layer flow due to a rotating disk. The motivation is to extend the stationary work of [ 1] ( hereafter referred to as S90) to incorporate into the nonstationary mode so that it will be investigated whether the finite amplitude destabilization of the boundary layer is owing to this mode or the mode of S90. Therefore, the basic compressible flow obtained in the large Reynolds number limit is perturbed by disturbances that are nonlinear and also time dependent. In this connection, the effects of nonlinearity are explored allowing the finite amplitude growth of a disturbance close to the neutral location and thus, a finite amplitude equation governing the evolution of the nonlinear lower branch modes is obtained. The coefficients of this evolution equation clearly demonstrate that the nonlinearity is destabilizing for all the modes, the effect of which is higher for the nonstationary waves as compared to the stationary waves. Some modes particularly having positive frequency, regardless of the adiabatic or wall heating/cooling conditions, are always found to be unstable, which are apparently more important than those stationary modes determined in S90. The solution of the asymptotic amplitude equation reveals that compressibility as the local Mach number increases, has the influence of stabilization by requiring smaller initial amplitude of the disturbance for the laminar rotating disk boundary layer flow to become unstable. Apart from the already unstable positive frequency waves, perturbations with positive frequency are always seen to compete to lead the solution to unstable state before the negative frequency waves do. Also, cooling the surface of the disk will be apparently ineffective to suppress the instability mechanisms operating in this boundary layer flow.