Estimation of the Genome-Wide Mutation Rate and Spectrum in the Archaeal SpeciesHaloferax volcanii


Kucukyildirim S. , Behringer M., Williams E. M. , Doak T. G. , Lynch M.

GENETICS, vol.215, no.4, pp.1107-1116, 2020 (Journal Indexed in SCI) identifier identifier identifier

  • Publication Type: Article / Article
  • Volume: 215 Issue: 4
  • Publication Date: 2020
  • Doi Number: 10.1534/genetics.120.303299
  • Title of Journal : GENETICS
  • Page Numbers: pp.1107-1116

Abstract

Organisms adapted to life in extreme habitats (extremophiles) can further our understanding of the mechanisms of genetic stability, particularly replication and repair. Despite the harsh environmental conditions they endure, these extremophiles represent a great deal of the Earth's biodiversity. Here, for the first time in a member of the archaeal domain, we report a genome-wide assay of spontaneous mutations in the halophilic speciesHaloferax volcaniiusing a direct and unbiased method: mutation accumulation experiments combined with deep whole-genome sequencing.H. volcaniiis a key model organism not only for the study of halophilicity, but also for archaeal biology in general. Our methods measure the genome-wide rate, spectrum, and spatial distribution of spontaneous mutations. The estimated base substitution rate of 3.15 x 10(-10)per site per generation, or 0.0012 per genome per generation, is similar to the value found in mesophilic prokaryotes (optimal growth at similar to 20-45 degrees). This study contributes to a comprehensive phylogenetic view of how evolutionary forces and molecular mechanisms shape the rate and molecular spectrum of mutations across the tree of life.