Publications & Works

Publication Network
Published journal articles indexed by SCI, SSCI, and AHCI

Detailed characterization of bone marrow adipose tissue mesenchymal stem cells in healthy donor, Fanconi anemia, and acute myeloid leukemia

Muratoglu B., ÖZDEMİR SAKA C., EYLEM C. C., REÇBER T., NEMUTLU E., ALPDÜNDAR BULUT E., et al.
BONE , 2025 (SCI-Expanded) identifier identifier

Circadian-based metabolomics and lipidomics of bone marrow adipose tissue and implications in myeloid leukemia pathogenesis: the crucial role of cell synchronization

Muratoglu B., ÖZDEMİR SAKA C., Recber T., Eylem C. C., Nemutlu E., Uckan-Cetinkaya D.
FEBS OPEN BIO , pp.259, 2024 (SCI-Expanded) identifier

Multiparametric analysis of etoposide exposed mesenchymal stem cells and Fanconi anemia cells: implications in development of secondary myeloid malignancy

ÖZDEMİR SAKA C., Muratoğlu B., Özel B., ALPDÜNDAR BULUT E., Tonyalı G., ÜNAL S., et al.
Clinical and Experimental Medicine , vol.23, no.8, pp.4511-4524, 2023 (SCI-Expanded) identifier identifier

Pro-fibrogenic and adipogenic aspects of chronic muscle degeneration are contributed by distinct stromal cell subpopulations

ÖZDEMİR SAKA C., Akçay D., Yöyen-Ermiş D., Taşkıran E. Z., Soylu-Kucharz R., ESENDAĞLI G., et al.
PloS one , vol.18, no.7, 2023 (SCI-Expanded) Creative Commons License identifier identifier

Identification of mesenchymal stem cell subpopulations from bone marrow adipose tissue of Fanconi anemia and acute myeloid leukemia patients

Ozdemir C., Muratoglu B., Tonyali G., Uckan-Cetinkaya D.
FEBS OPEN BIO , vol.12, pp.98, 2022 (SCI-Expanded) identifier

Investigation of time-course and dose-dependent regulation of circadian clock genes with aryl hydrocarbon receptor-induced human bone marrow mesenchymal stem cells

Muratoglu B., Ozdemir C., Ozmen E. B., Uckan-Cetinkaya D.
FEBS OPEN BIO , vol.12, pp.298, 2022 (SCI-Expanded) identifier

Alterations in Hematopoietic and Mesenchymal Stromal Cell Components of the Osteopetrotic Bone Marrow Niche

Zeytin I. C., Alkan B., ÖZDEMİR SAKA C., ÇETİNKAYA F. D., OKUR F. V.
STEM CELLS TRANSLATIONAL MEDICINE , vol.11, no.3, pp.310-321, 2022 (SCI-Expanded) Creative Commons License Sustainable Development identifier identifier identifier

The investigation of mechanisms of secondary leukemia through etoposide exposed mesenchymal stromal cells

Ozdemir C., Ozel B. N., Bulut E. A., Cetinkaya D. U.
FEBS OPEN BIO , vol.11, pp.424, 2021 (SCI-Expanded) identifier

Osteopetrotic induced pluripotent stem cells derived from patients with different disease-associated mutations by non-integrating reprogramming methods

OKUR F. V., Cevher I., ÖZDEMİR SAKA C., Kocaefe C., ÇETİNKAYA F. D.
STEM CELL RESEARCH & THERAPY , vol.10, 2019 (SCI-Expanded) identifier identifier identifier

The fibrogenic activation kinetics of stromal stem cells in three different skeletal muscle degeneration models

Ozdemir C., Akcay D., Ermis D. Y., ESENDAĞLI G., Kocaefe C.
FEBS OPEN BIO , vol.8, pp.93, 2018 (SCI-Expanded) identifier

GENERATION OF INDUCED PLURIPOTENT STEM CELLS FROM MESENCHYMAL STEM CELLS OF OSTEOPETROSIS PATIENTS BY TWO DIFFERENT INTEGRATION-FREE METHODS UNDER FEEDER-FREE CONDITIONS

Okur F. V., Cevher I., Kilic E., Ozdemir C., Kocaefe C., Cetinkaya D. U.
CYTOTHERAPY , vol.20, no.5, 2018 (SCI-Expanded) identifier

Periostin is temporally expressed as an extracellular matrix component in skeletal muscle regeneration and differentiation

OZDEMIR C., Akpulat U., SHARAFI P., YILDIZ Y., ONBAŞILAR İ., Kocaefe C.
GENE , vol.553, no.2, pp.130-139, 2014 (SCI-Expanded) identifier identifier identifier
Articles Published in Other Journals

Simple Isolation of Human Bone Marrow Adipose Tissue-Derived Mesenchymal Stem/Stromal Cells

Tonyali G., Kilic E., Muratoglu B., ALPDÜNDAR BULUT E., ÖZDEMİR SAKA C., Uckan-cetinkaya D.
CURRENT PROTOCOLS , vol.5, no.1, 2025 (ESCI) identifier identifier identifier

Upstream Process Protocol for MSCs Isolated from Different Human-Based Tissue Origins.

Kılıç P., Özdemir C., Coşar B., Savran B. N., Sarıkaya A., Sargon B., et al.
Methods in molecular biology (Clifton, N.J.) , 2024 (Scopus) identifier

The evaluation of telomere length and telomerase activity measurement in Neurofibromatosis type 1 NF1 tumors

SHARAFI P., KILIÇ Z., ANLAR B., VARAN A., ERSOY EVANS S., VARGEL İ., et al.
Türk Hijyen ve Deneysel Biyoloji Dergisi , vol.80, no.3, pp.365-372, 2023 (Scopus) Creative Commons License identifier identifier
Refereed Congress / Symposium Publications in Proceedings

Modeling Hematopoietic Niche in Osteopetrosis Using Patient-Derived Induced Pluripotent Stem Cells

cevher i., Alkan B., ÖZDEMİR SAKA C., ÇETİNKAYA F. D., OKUR F. V.
ESGCT, Barcelona, Spain, 22 - 25 October 2019

Modeling haematopoietic niche in osteopetrosis using patient-derived induced pluripotent stem cells

Cevher I., Alkan B., Ozdemir C., Cetinkaya D. U., Okur F. V.
ESGCT 27th Annual Congress in collaboration with SETGyc Meeting, Barcelona, Spain, 22 - 25 October 2019, vol.30 identifier

Characterization of the Cellular Localization andExpression of AEBP1/ACLP Transcripts with anUnknown Function in Myoblasts

kılıç h. b., akçay d., sevim d., ÖZDEMİR SAKA C., KOCAEFE Y. Ç.
Molbiokon18 6th International Congress of theMolecular Biology Association of Turkey, 5 - 08 September 2018

Characterization of the Cellular Localization and Expression of AEBP1/ACLP Transcripts with an Unknown Function in Myoblasts

KILIÇ H. B., Akçay D., ÖZDEMİR SAKA C., KOCAEFE Y. Ç.
Molbiyokon’18, İzmir, Turkey, 05 September 2018

The Fibrogenic Activation Kinetics of Stromal Stem Cells in Three Different Skeletal Muscle Degeneration Models

ÖZDEMİR SAKA C., AKÇAY D., YÖYEN ERMİŞ D., ESENDAĞLI G., KOCAEFE Y. Ç.
43rd FEBS CONGRESS, 7 - 12 July 2018

Comparative Transcriptome Analysis of Distinct Stromal Cell Populations During Extracellular Matrix Remodeling in Skeletal Muscle

ÖZDEMİR SAKA C., AKÇAY D., YÖYEN ERMİŞ D., TAŞKIRAN Z. E., ESENDAĞLI G., KOCAEFE Y. Ç.
13th Meeting of the Mediterrranean Society of Myology, 27 - 29 June 2018, vol.37, pp.129-183

GENERATION OF INDUCED PLURIPOTENT STEM CELLS FROMMESENCHYMAL STEM CELLS OF OSTEOPETROSIS PATIENTSBY TWO DIFFERENT INTEGRATION-FREE METHODS UNDERFEEDER-FREE CONDITIONS

OKUR F. V., CEVHER İ., KILIÇ E., ÖZDEMİR SAKA C., KOCAEFE Y. Ç., ÇETİNKAYA F. D.
ISCT, 2 - 05 May 2018

AEBP1/ACLP is upregulated in differentiation, injury repair and fibrotic degeneration of skeletal muscle

Ozdemir C., Akpulat U., Onbasilar I., Kocaefe C.
41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey, 3 - 08 September 2016, vol.283, pp.287 identifier

Klf5 acts as a differentiation switch from proliferation to fusion in myoblasts

Akpulat U., YILDIZ Y., Ozdemir-Saka C., Akcay D., Kocaefe C.
41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey, 3 - 08 September 2016, vol.283, pp.114 identifier
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49

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52

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15

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3
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